SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene57300

Length: 228 nt

UniGene Fasta

>sp_v3.0_unigene57300
GAAATACAGAAGAAGATACCAAAGGGAACACTAGAGCGCTCAAAACTTGGGACTCAAATCTTGTAGCTAATGGCTTTGAAATTCTTGTCGTCTCTCAATTCACTTTGTACGGAATTCTCAAAGCAAATAAGCCTGACTTTCATAAGGCCTTGAACCCAGAAGAAGCAATAAAGATATACGACAGCTTTGTAGCACAAACTGAAGAAAGATTACAAGCCCGAGAGAGTT

Ace file of the UniGene sp_v3.0_unigene57300

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RG40_PHYPA	-	-	1.0e-10	48%
FL-Next	sp=D-tyrosyl-tRNA(Tyr) deacylase; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	48%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G18460.1	D-Tyr-tRNA(Tyr) deacylase family protein chr4:10195763-10196679 REVERSE LENGTH=153	2.0e-13	49%
RefSeq	Arabidopsis thaliana	NP_193582.2	D-tyrosyl-tRNA(Tyr)deacylase [Arabidopsis thaliana]	2.0e-13	49%
RefSeq	Populus trichocarpa	XP_002331968.1	predicted protein [Populus trichocarpa]	1.0e-14	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9RG40

Fln msg: Distance to subject end: 42 aas, your sequence is shorter than subject: 75 - 165

Fln protein: NTEEDTKGNTRALKTWDSNLVANGFEILVVSQFTLYGILKANKPDFHKALNPEEAIKIYDSFVAQTEERLQARES

Protein Length: 76

Fln nts: GAAATACAGAAGAAGATACCAAAGGGAACACTAGAGCGCTCAAAACTTGGGACTCAAATCTTGTAGCTAATGGCTTTGAAATTCTTGTCGTCTCTCAATTCACTTTGTACGGAATTCTCAAAGCAAATAAGCCTGACTTTCATAAGGCCTTGAACCCAGAAGAAGCAATAAAGATATACGACAGCTTTGTAGCACAAACTGAAGAAAGATTACAAGCCCGAGAGAGTT

Fln Alignment:

F5V9AAZ01EU9BS___NTRALKTWDSNLVANGFEILVVSQFTLYGILKANKPDFHKALNPEEAIKIYDSFVAQTEE
A9RG40_______________NEKTGKSWDQNVMQKNYEVLLVSQFTLYGVLKGNKPDFHVAMPPQLAKSFYESLVQRVRK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain