SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene57206

Length: 185 nt

UniGene Fasta

>sp_v3.0_unigene57206
ATGGGATATACGGGCGGCTAGGAGACCTTGGTGCAATTCATGCAAAATATGACATCGCTATATCAACTGCTTGTGGAGGGCTTGACTTTATTGTGGTCGAAACTACATCTGCTGCCCAGTCGTGTGTTGAATTATTGCGAAGCAAAAATCTTGGTATTGCAACATTTATGATACTTGAGAAGCAA

Ace file of the UniGene sp_v3.0_unigene57206

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative SMC protein [Oryza sativa Japonica Group] gb\|EEC79459.1\| hypothetical protein OsI_20467 [Oryza sativa Indica Group] gb\|EEE64226.1\| hypothetical protein OsJ_19059 [Oryza sativa Japonica Group]	-	-	2.0e-22	85%
FL-Next	sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	83%
Sma3	Structural maintenance of chromosomes protein 4	-	-	2.848e-09	-

Source	Gene names
Sma3	At5g48600; CAP-C; CHLREDRAFT_122088; CPC1501; CPC901; GSVIVT00020959001; K15N18.7; MICPUCDRAFT_33825; MICPUN_56721; OJ1118_C04.7; OSTLU_242; Os05g0497100; OsI_20467; OsJ_19059; Ot06g01430; PHATR_44165; PHYPADRAFT_111974; POPTRDRAFT_577636; RCOM_0100760; S

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	mitotic chromosome condensation	GO:0007076	Biological Process	-
Sma3	meiosis	GO:0007126	Biological Process	-
Sma3	chromosome organization	GO:0051276	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	RecF/RecN/SMC	IPR003395	-	0.0	-
Sma3	SMCs flexible hinge	IPR010935	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G48600.2	SMC3 structural maintenance of chromosome 3 chr5:19701908-19709091 FORWARD LENGTH=1244	1.0e-27	83%
RefSeq	Arabidopsis thaliana	NP_199671.1	structural maintenance of chromosomes protein 4 [Arabidopsis thaliana]	1.0e-27	83%
RefSeq	Populus trichocarpa	XP_002323859.1	condensin complex components subunit [Populus trichocarpa]	2.0e-26	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FJL0

Fln msg: Distance to subject end: 625 aas, your sequence is shorter than subject: 61 - 1241

Fln protein: GIYGRLGDLGAIHAKYDIAISTACGGLDFIVVETTSAAQSCVELLRSKNLGIATFMILEKQ

Protein Length: 62

Fln nts: ATGGGATATACGGGCGGCTAGGAGACCTTGGTGCAATTCATGCAAAATATGACATCGCTATATCAACTGCTTGTGGAGGGCTTGACTTTATTGTGGTCGAAACTACATCTGCTGCCCAGTCGTGTGTTGAATTATTGCGAAGCAAAAATCTTGGTATTGCAACATTTATGATACTTGAGAAGCAA

Fln Alignment:

F51TW9002FZE2M___GIYGRLGDLGAIHAKYDIAISTACGGLDFIVVETTSAAQSCVELLRSKNLGIATFMILEKQ
Q9FJL0_______________GIYGRMGDLGAIDAKYDVAISTACAGLDYIVVETTSSAQACVELLRKGNLGFATFMILEKQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain