SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene57103

Length: 145 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene57103
TGATTCCTTGTGTAGAAGACTTTCAACTTTCTGCAATGAATCCATATGGACGCACCAAGCTCTTCCTTGAAGAGATAGCCCGTGATATTTATAAGGCAGATCCAGATTGGAAAAGAATAATTTTGCTGAGGTACTTCAACCCAGT

Ace file of the UniGene sp_v3.0_unigene57103 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=UDP-glucose 4-epimerase; AltName: Full=Galactowaldenase; AltName: Full=UDP-galactose 4-epimerase gb\|AAA86532.1\| UDP-galactose-4-epimerase [Pisum sativum]	-	-	5.0e-16	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	UDP-glucose 4-epimerase	-	-	7.787e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	UDP-glucose 4-epimerase.	EC:5.1.3.2	-	3.716e-29	-

Source	KEGGs	Term	e value	Identity
Sma3	Galactose metabolism	00052	3.716e-29	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520	3.716e-29	%
Sma3	Metabolic pathways	01100	3.716e-29	%

Source	Gene names
Sma3	AT1G12780; At1g12780; At1g63180; At1g63180/F16M19_8; At1g64440; At4g10960; At4g23920; At4g23920/T32A16_90; F13K23.3; F15H21.11; F16M19.8; F25I24.170; F8M12.10; GALE; GSVIVT00001116001; GSVIVT00006740001; GSVIVT00006742001; GalE; OJ1439_F07.18; OSJNBa0030I

Source	GOs	Term	Type	Identity
Sma3	Golgi stack	GO:0005795	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	UDP-glucose 4-epimerase activity	GO:0003978	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	galactose metabolic process	GO:0006012	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	plant-type cell wall biogenesis	GO:0009832	Biological Process	-
Sma3	xyloglucan biosynthetic process	GO:0009969	Biological Process	-
Sma3	root epidermal cell differentiation	GO:0010053	Biological Process	-
Sma3	cell wall biogenesis	GO:0042546	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sulfatase	IPR000917	-	-
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	UDP-glucose 4-epimerase	IPR005886	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	-
Sma3	Nucleotide sugar epimerase	IPR008089	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G12780.1	UGE1, ATUGE1 UDP-D-glucose/UDP-D-galactose 4-epimerase 1 chr1:4356124-4358120 REVERSE LENGTH=351	6.0e-22	85%
RefSeq	Arabidopsis thaliana	NP_172738.1	UDP-D-glucose/UDP-D-galactose 4-epimerase 1 [Arabidopsis thaliana]	8.0e-22	85%
RefSeq	Populus trichocarpa	XP_002304478.1	predicted protein [Populus trichocarpa]	4.0e-21	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKM2

Fln msg: Distance to subject end: 160 aas, your sequence is shorter than subject: 47 - 356

Fln protein: IPCVEDFQLSAMNPYGRTKLFLEEIARDIYKADPDWKRIILLRYFNP

Protein Length: 48

Fln nts: TGATTCCTTGTGTAGAAGACTTTCAACTTTCTGCAATGAATCCATATGGACGCACCAAGCTCTTCCTTGAAGAGATAGCCCGTGATATTTATAAGGCAGATCCAGATTGGAAAAGAATAATTTTGCTGAGGTACTTCAACCCAGT

Fln Alignment:

F51TW9002I4TUQ___IPCVEDFQLSAMNPYGRTKLFLEEIARDIYKADPDWKRIILLRYFNP
B8LKM2_______________IPCVEDFQLSAMNPYGRTKLFLEEIARDVYQADPDW-RIILLRYFNP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain