SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene57093

Length: 347 nt

UniGene Fasta

>sp_v3.0_unigene57093
ATGGGGGAAGGAGAGCCTTGGGTTGTTGCTTCTCGACTCAGGGATCATCTTCTCTTACCAAGAGAGAGAAAAAATGCCATTCTTTGGAGGTTGAGGAATTCATCCAAGAGGATTCTCGCATTGATCAATATCCTAAACTTGTGAAAGGTGAATCCAGAGTTGTGCTGGAATGGCAAGTAGAAGGGGCATTGCGTTCAAGAGCACAGTGTGGAGATTTGCACCAAAGAGTATTCTCATCACAGGAGAGCTCAAATGTGCTGGATGAAAATCTCCATCTGTCACATGCTCCAGTTGCAGGTCTTAATGACTGATTATGCGTCAAGAAGATGTTTTCAAGAATAAGGATG

Ace file of the UniGene sp_v3.0_unigene57093

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	79%

Source	Gene names
Sma3	GSVIVT00015822001;

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G46560.1	" CONTAINS InterPro DOMAIN/s: Inner nuclear membrane protein MAN1 (InterPro:IPR018996); Has 58 Blast hits to 58 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 15; Plants - 20; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLin	1.0e-16	50%
RefSeq	Arabidopsis thaliana	NP_199468.5	uncharacterized protein [Arabidopsis thaliana]	2.0e-16	50%
RefSeq	Populus trichocarpa	XP_002326500.1	predicted protein [Populus trichocarpa]	2.0e-13	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7TTG5

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 90 and 87, your sequence is shorter than subject: 104 - 383

Fln protein: MGEGEPWVVASRLRDHLLLPRERKNAILxxxEEFIQEDSRIDQYPKLVKGESRVVLEWQVEGALRSRAQCGDLHQRVFSSQESSNVLDENLHLSHAPVAGLND*

Protein Length: 105

Fln nts: ATGGGGGAAGGAGAGCCTTGGGTTGTTGCTTCTCGACTCAGGGATCATCTTCTCTTACCAAGAGAGAGAAAAAATGCCATTCTTxxxxxxxxxGAGGAATTCATCCAAGAGGATTCTCGCATTGATCAATATCCTAAACTTGTGAAAGGTGAATCCAGAGTTGTGCTGGAATGGCAAGTAGAAGGGGCATTGCGTTCAAGAGCACAGTGTGGAGATTTGCACCAAAGAGTATTCTCATCACAGGAGAGCTCAAATGTGCTGGATGAAAATCTCCATCTGTCACATGCTCCAGTTGCAGGTCTTAATGACTGATTATGCGTCAAGAAGATGTTTTCAAGAATAAGGATG

Fln Alignment:

F51TW9002J1QYW___GEGEPWVVASRLRDHLLLPRERKNAILWREVEEFIQEDSRIDQYPKLVKGESRVVLEWQVEGALRSR
D7TTG5_______________GEGEPWVVVSWLRDHLLLPKERKDPLLWRKVEELVQEDSRLDRYPKLVKGESKVVWEWQVEGSLSSR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain