SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene57070

Length: 233 nt

UniGene Fasta

>sp_v3.0_unigene57070
ATGGGATTTGTGGCTGCATTTGGGTGGTCATGGGGTCCTCTCGGAGACTGTGCCAAGTGAAATATTCCCACTAGAAACAACGCTCTGCTGGGCAAGCCATAACGGTGTCCGTGAACCTTCTTTTCACATTTGCGGTTGCACAAGGCTTCTTATCTCTTTTATGTTCCTTCGAGTACGGGATTTTCCTGTTATTTGCATCCTGGATTTGTATCATGACTGCGTTTGTATACCTC

Ace file of the UniGene sp_v3.0_unigene57070

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sugar carrier protein A n=6 Tax=Andropogoneae RepID=B6TMZ9_MAIZE	-	-	2.0e-21	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	Hexose transporter	-	-	3.218e-12	-

Source	Gene names
Sma3	AGAA.1; At4g02050; At5g26340; B1008E06.22-1; F9D12.17; GSVIVT00005628001; GSVIVT00019956001; GSVIVT00030854001; HEX6; HT3; HT4; HT5; HT7; Hex9; MSS1; OJ1606_D04.111; OSJNBa0088O14.48; Os07g0131200; Os07g0131600; Os09g0268300; Os09g0416200; OsI_24778; OsI_

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	high-affinity hydrogen:glucose symporter activity	GO:0005358	Molecular Function	-
Sma3	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	transmembrane transport	GO:0055085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02050.1	STP7 sugar transporter protein 7 chr4:898387-900095 REVERSE LENGTH=513	2.0e-22	70%
RefSeq	Arabidopsis thaliana	NP_192114.1	sugar transport protein 7 [Arabidopsis thaliana]	2.0e-22	70%
RefSeq	Populus trichocarpa	XP_002308382.1	predicted protein [Populus trichocarpa]	5.0e-22	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB82

Fln msg: Overlapping hits, possible frame ERROR between 45 and 32, and possible frame ERROR between 79 and 81, Distance to subject end: 42 aas, your sequence is shorter than subject: 79 - 226

Fln protein: MGFVAAFGWSxxxxxxTVPSEIFPLExQRSAGQAITVSVNLLFTFAVAQGFLSLLCSFEYGIFLLFASWICIMTAFVYL

Protein Length: 80

Fln nts: ATGGGATTTGTGGCTGCATTTGGGTGGTCAxxxxxxxxxxxxxxxxxxACTGTGCCAAGTGAAATATTCCCACTAGAAxxxCAACGCTCTGCTGGGCAAGCCATAACGGTGTCCGTGAACCTTCTTTTCACATTTGCGGTTGCACAAGGCTTCTTATCTCTTTTATGTTCCTTCGAGTACGGGATTTTCCTGTTATTTGCATCCTGGATTTGTATCATGACTGCGTTTGTATACCTC

Fln Alignment:

F51TW9002JLERZ___FVAAFGWSWxxxxETVPSEIFPLETxRSAGQAITVSVNLLFTFAVAQGFLSLLCSFEYGIFLLFASWICIMTAFVY
D5AB82_______________FVAAFGWSWxxxxWTVPSEIFPLETxRSAGQAITVSVNLLFTFAIAQAFLYLLCTFKYGIFLFFAGWICIMTTFVY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain