SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56907

Length: 482 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene56907
CTTGAAGATGAGATCCTGCCTTTTGCAGCAGCCAACGAATTCGGAGACCTGACATGGTATTCATCGCAGCGTCGAGTCGTCCACAGAATCGACAGTCGTGTCCCGGTCACCACCCCCGGGAACGGCTTCAACGATTTCTTGGGTTTTCAAAGCACTCTCACTGCCGTTAGCGCAGTCGTGAGAGCAACGGAAAATTCGCTGGAAAATAAGAAAGATACCCTAGGAAAGTGCAAGGAAGCCAAACTCATCGTCGATTCCAAGATGGGTTTGGCCAACGGTTTAAAGAACAATGAATTTGCCTTCACGGGATATCCGGTGGTGGGTTTTCAAAATCGGATGCAGACATCTGGGTCGTGCTATAAATCTCCCCCCGCCGAACTGCTGGTCGCCTGTCCTTGGGATCCCAGATTCAAGGGCTTATTCTTCTACGAGACCACGGCAATTTTCAGGGTTTCGACAATCAAATCCTTTATTTCAGACGT

Ace file of the UniGene sp_v3.0_unigene56907 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FAD binding domain containing protein-like n=2 Tax=Oryza sativa RepID=Q8S9W7_ORYSJ	-	-	2.00386e-43	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%

Source	Gene names
Sma3	At2g46740; At2g46750; At2g46760; At5g56490; F15N18_130; GSVIVT00026155001; GSVIVT00032453001; Os01g0687800; OsI_03321; P0519D04.25; POPTRDRAFT_799138; POPTRDRAFT_809065; POPTRDRAFT_850663; RCOM_0732560; RCOM_0802540; STB1_57t00023; VITISV_031548;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	D-arabinono-1,4-lactone oxidase activity	GO:0003885	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-
Sma3	D-arabinono-1,4-lactone oxidase	IPR007173	-	-
Sma3	Plant-specific FAD-dependent oxidoreductase	IPR010030	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	FAD-linked oxidase, FAD-binding, subdomain 2	IPR016168	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G11540.1	D-arabinono-1,4-lactone oxidase family protein chr5:3703002-3704981 REVERSE LENGTH=585	51%
RefSeq	Arabidopsis thaliana	NP_196715.1	D-arabinono-1,4-lactone oxidase family protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002302669.1	predicted protein [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9T9

Fln msg: Distance to subject end: 216 aas, your sequence is shorter than subject: 160 - 542

Fln protein: LEDEILPFAAANEFGDLTWYSSQRRVVHRIDSRVPVTTPGNGFNDFLGFQSTLTAVSAVVRATENSLENKKDTLGKCKEAKLIVDSKMGLANGLKNNEFAFTGYPVVGFQNRMQTSGSCYKSPPAELLVACPWDPRFKGLFFYETTAIFRVSTIKSFISD

Protein Length: 161

Fln nts: CTTGAAGATGAGATCCTGCCTTTTGCAGCAGCCAACGAATTCGGAGACCTGACATGGTATTCATCGCAGCGTCGAGTCGTCCACAGAATCGACAGTCGTGTCCCGGTCACCACCCCCGGGAACGGCTTCAACGATTTCTTGGGTTTTCAAAGCACTCTCACTGCCGTTAGCGCAGTCGTGAGAGCAACGGAAAATTCGCTGGAAAATAAGAAAGATACCCTAGGAAAGTGCAAGGAAGCCAAACTCATCGTCGATTCCAAGATGGGTTTGGCCAACGGTTTAAAGAACAATGAATTTGCCTTCACGGGATATCCGGTGGTGGGTTTTCAAAATCGGATGCAGACATCTGGGTCGTGCTATAAATCTCCCCCCGCCGAACTGCTGGTCGCCTGTCCTTGGGATCCCAGATTCAAGGGCTTATTCTTCTACGAGACCACGGCAATTTTCAGGGTTTCGACAATCAAATCCTTTATTTCAGACGT

Fln Alignment:

F51TW9002IITVT___LEDEILPFAAANEFGDLTWYSSQRRVVHRIDSRVPVTTPGNGFNDFLGFQSTLTAVSAVVRATENSLENKKDTLGKCKEAKLIVDSKMGLANGLKNNEFAFTGYPVVGFQNRMQTSGSCYKSPPAELLVACPWDPRFKGLFFYETTAIFRVSTIKSFISD
D5A9T9_______________LENRIAQFGLEHEFADVTWHPAQRKVVYRVDDRVPVNTSGNGVNDFIGFRPTFSPLLATARIAEEIEESHNGTNSKCALSFVRVSSILQLGTGLKNNDLQFHGYPVIGYQNNMQAAGSCLSSPEDGLQTACGWDPRIKGLFFFQNGISISVSKIGQFLSD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain