SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56871

Length: 247 nt

UniGene Fasta

>sp_v3.0_unigene56871
ATGGGCCAGGCCCTTCATGCCTTTATGCGTTCGCTATGCTATGACTGAACATGCTGATTCTTGGCCATTCAAGGACCCAGTAGATCCTCATGATGTGCCTGACTACTATGATATCATAAAAGATCCAATGGGTAAATCTATTTGAAAACAATGTCAAAGCGCCTGGACAGTGAGCAATACTATGTAACACTGGACATGTTCATTGCGGATGTAAAGAGGATGTTTACGAATGCACGCAAATATAATG

Ace file of the UniGene sp_v3.0_unigene56871

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone acetyltransferase (Fragment) n=1 Tax=Triticum aestivum RepID=Q7XYD0_WHEAT	-	-	1.0e-11	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Histone acetyltransferase	-	-	9.378e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histone acetyltransferase.	EC:2.3.1.48	-	2.171e-06	-

Source	Gene names
Sma3	GCN5; GSVIVT00023830001; HAC104; HAG1501; LOC_Os10g28040; Os10g0415900; OsI_33575; OsJ_31522; PHYPADRAFT_130814; RCOM_0991560; gcn5;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	histone acetyltransferase activity	GO:0004402	Molecular Function	-
Sma3	N-acetyltransferase activity	GO:0008080	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GNAT domain	IPR000182	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54610.1	HAT1, GCN5, HAG1, HAC3, HAG01, BGT histone acetyltransferase of the GNAT family 1 chr3:20213593-20217375 FORWARD LENGTH=568	1.0e-10	67%
RefSeq	Populus trichocarpa	XP_002306812.1	histone acetyltransferase [Populus trichocarpa]	4.0e-12	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPU6

Fln msg: Separated hits, possible frame ERROR between 130 and 142, Distance to subject end: 33 aas, your sequence is shorter than subject: 82 - 630

Fln protein: WARPFMPLCVRYAMTEHADSWPFKDPVDPHDVPDYYDIIKDPxxxxxLKTMSKRLDSEQYYVTLDMFIADVKRMFTNARKYN

Protein Length: 83

Fln nts: ATGGGCCAGGCCCTTCATGCCTTTATGCGTTCGCTATGCTATGACTGAACATGCTGATTCTTGGCCATTCAAGGACCCAGTAGATCCTCATGATGTGCCTGACTACTATGATATCATAAAAGATCCAATxxxxxxxxxxxxTTTGAAAACAATGTCAAAGCGCCTGGACAGTGAGCAATACTATGTAACACTGGACATGTTCATTGCGGATGTAAAGAGGATGTTTACGAATGCACGCAAATATAATG

Fln Alignment:

F51TW9002HI4WK___AMTEHADSWPFKXXXXXXXXXXXXXIIKDPMxxxxLKTMSKRLDSEQYYVTLDMFIADVKRMFTNARKYN
B8LPU6_______________AMTEHADAWPFKDPVDPRDVPDYYDIIKDPMxxxxLKTMSKRLDSEQYYVTLDMFVADVKRMFTNARTYN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain