SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56830

Length: 496 nt

UniGene Fasta

>sp_v3.0_unigene56830
AAGTGGTGGTGGTGAGCAAGGTCCCTTTGCCAAATTACAGACCTGATTTGGATGACAGGCGTCCACAGCGGGAGGTTATCATTCCTCTTGGAGTGCAAAAACAAGTGGGGAGTCTTCTTCGACAACATCTTGATAAAAAAAGAGTGAATGCAAACCTGTCACTGAACGGGGGTATTTCTGGTACAAGAGTCAATGATACCTTTAATGATGCTGAGCTTTTTGAAGAAAATGAACATAAAATGCCTGATAGTACTGTTCTGGAAAACATTCTGAAGCGAAGAAGTTTGCATATCCGCAATAAGCAGCGGGCCTGGCAGGAAACACCTGAAGGCCAAAAGATGCTAGGTTTCAGAAGATCTCTTCCTGCTTACAATGAGAAGGATGCATTGCTTGAAGCTGTGGCAAGGAATCAGGTCATTGTTGTATCTGGGGAGACTGGCTGTGGGAAAACAACACAACTTCCTCAATACATATTAGAGTCTGAAATAGCAGCTGG

Ace file of the UniGene sp_v3.0_unigene56830

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana] dbj\|BAB11511.1\| ATP-dependent RNA helicase A-like protein [Arabidopsis thaliana] gb\|AED90801.1\| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]	-	-	0.0	56%
FL-Next	sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	44%
Sma3	ATP-dependent RNA helicase, putative	-	-	4.686e-09	-

Source	Gene names
Sma3	At2g01130; F11I4_16; GSVIVT00009138001; GSVIVT00017756001; GSVIVT00030427001; LOC_Os03g53760; MICPUN_77912; OSJNBa0069E14.16; Os03g0748800; OsI_00149; OsI_13511; OsJ_00159; OsJ_12573; P0494A10.16; PHYPADRAFT_197737; POPTRDRAFT_420510; POPTRDRAFT_822106; P

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	double-stranded RNA binding	GO:0003725	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Fructose-bisphosphate aldolase, class-I	IPR000741	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G04895.1	DEA(D/H)-box RNA helicase family protein chr5:1428796-1434516 FORWARD LENGTH=1161	56%
RefSeq	Arabidopsis thaliana	NP_680142.2	DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002310975.1	predicted protein, partial [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: O22899

Fln msg: Distance to subject end: 619 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 85 - 729

Fln protein: MPDSTVLENILKRRSLHIRNKQRAWQETPEGQKMLGFRRSLPAYNEKDALLEAVARNQVIVVSGETGCGKTTQLPQYILESEIAA

Protein Length: 86

Fln nts: AAGTGGTGGTGGTGAGCAAGGTCCCTTTGCCAAATTACAGACCTGATTTGGATGACAGGCGTCCACAGCGGGAGGTTATCATTCCTCTTGGAGTGCAAAAACAAGTGGGGAGTCTTCTTCGACAACATCTTGATAAAAAAAGAGTGAATGCAAACCTGTCACTGAACGGGGGTATTTCTGGTACAAGAGTCAATGATACCTTTAATGATGCTGAGCTTTTTGAAGAAAATGAACATAAA_-_ATGCCTGATAGTACTGTTCTGGAAAACATTCTGAAGCGAAGAAGTTTGCATATCCGCAATAAGCAGCGGGCCTGGCAGGAAACACCTGAAGGCCAAAAGATGCTAGGTTTCAGAAGATCTCTTCCTGCTTACAATGAGAAGGATGCATTGCTTGAAGCTGTGGCAAGGAATCAGGTCATTGTTGTATCTGGGGAGACTGGCTGTGGGAAAACAACACAACTTCCTCAATACATATTAGAGTCTGAAATAGCAGCTGG

Fln Alignment:

F51TW9002ITW0B___KMLGFRRSLPAYNEKDALLEAVARNQVIVVSGETGCGKTTQLPQYILESEIA
O22899_______________EILEKRRDLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVA

SSRs (tot: 1)

Start position	End position	Sequence	Length
3	14	GTG GTG GTG GTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain