SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56787

Length: 202 nt

UniGene Fasta

>sp_v3.0_unigene56787
GCTGGCTACGTGCCTGATACGAAGTTTGTGCTTCAAAATATAGATGAAGAGCAGAAGGAATACATCCTCTGTAGTCACAGTGAAAGACTGGCAATAGCTTTTGGCTTATTAGTACTTGCCCCACAAAGCTATCCGAATCAATAAAAACCTTCGCATGTGTGGTGATTGTCATATAGCCTCCAAGTTCATTTCCAAGATTGTT

Ace file of the UniGene sp_v3.0_unigene56787

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE	-	-	2.0e-16	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	Pentatricopeptide repeat protein	-	-	0.0	-

Source	Gene names
Sma3	GSVIVT00010543001; GSVIVT00026498001; GSVIVT00035690001; PHYPADRAFT_175641; POPTRDRAFT_751063; PPR; RCOM_1442850; VITISV_016374;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G57430.1	OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein chr3:21255731-21258403 REVERSE LENGTH=890	2.0e-17	62%
RefSeq	Arabidopsis thaliana	NP_191302.2	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	2.0e-17	62%
RefSeq	Populus trichocarpa	XP_002299387.1	predicted protein [Populus trichocarpa]	3.0e-17	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Overlapping hits, possible frame ERROR between 123 and 116, Distance to subject end: 26 aas, your sequence is shorter than subject: 68 - 246

Fln protein: AGYVPDTKFVLQNIDEEQKEYILCSHSERLAIAFGLLVxxxxKAIRINKNLRMCGDCHIASKFISKIV

Protein Length: 69

Fln nts: GCTGGCTACGTGCCTGATACGAAGTTTGTGCTTCAAAATATAGATGAAGAGCAGAAGGAATACATCCTCTGTAGTCACAGTGAAAGACTGGCAATAGCTTTTGGCTTATTAGTAxxxxxxxxxxxxAAAGCTATCCGAATCAATAAAAACCTTCGCATGTGTGGTGATTGTCATATAGCCTCCAAGTTCATTTCCAAGATTGTT

Fln Alignment:

F51TW9002JJASP___AGYVPDTKFVLQNIDEEQKEYILCSHSERLAIAFGLLVLxxHKAIRINKNLRMCGDCHIASKFISKIV
D5AAE0_______________AGYVPDTNFVLHDVEMEQKEHSLYHHSEKLAIAFGLISTxxGLPVRIIKNLRVCGDCHTATKFISKIV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain