SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56781

Length: 388 nt

UniGene Fasta

>sp_v3.0_unigene56781
GCTTACAGTATCAGGAATACTGTCTCGGTGTCCGGGGATAAGCTGAATCCGGCGGACAAGGAGAAGATCGACAAGGCCATCAATGGGGCGTTGGAGTGGCTGGACCGCAATCAGCTGGCGGAGGTGGAGGAGTTGGAAGACAAGCTGAAGGAGCTCCAAAGCATTTGCGATCCCATCATCGCAAAGATGTACCAGGGCGGATCAGGCAATGAACATATGGGCTCCTCCGCTCCCGGTTCCGGCGCCGGCCCTAAGATCGAAGAAGTGGATTAGAGATGGCCCTCTAAAGATCGTGCGGGCTGGTTATAAAGTAGTCTCTTTTGAATATGCAGTCGAAAGAAGTCCAATGCTTACTACTTCCATATGTATAATTTTCCATAATTGGCTG

Ace file of the UniGene sp_v3.0_unigene56781

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heat shock protein 70 (Fragment) n=1 Tax=Arachis diogoi RepID=E3NYT2_9FABA	-	-	7.0e-12	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	Heat shock protein 70	-	-	1.542e-27	-

Source	Gene names
Sma3	At1g16030; At3g09440; At3g12580; At5g02490; At5g02500; CHLREDRAFT_185673; F11F8; F3L24.33; GSVIVT00017185001; GSVIVT00018481001; GSVIVT00021301001; GSVIVT00024351001; GSVIVT00024357001; HSC-2; HSC-I; HSC70; HSC70-1; HSC70-2; HSC70-3; HSC70-3alpha; HSC70-3

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, uncoupled	GO:0042624	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to virus	GO:0009615	Biological Process	-
Sma3	response to bacterium	GO:0009617	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G02490.1	Heat shock protein 70 (Hsp 70) family protein chr5:550296-552565 REVERSE LENGTH=653	8.0e-14	57%
RefSeq	Arabidopsis thaliana	NP_195869.1	heat shock protein 70 [Arabidopsis thaliana]	1.0e-13	57%
RefSeq	Populus trichocarpa	XP_002311161.1	predicted protein [Populus trichocarpa]	2.0e-14	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXU2

Fln msg: your sequence is shorter than subject: 91 - 651

Fln protein: AYSIRNTVSVSGDKLNPADKEKIDKAINGALEWLDRNQLAEVEELEDKLKELQSICDPIIAKMYQGGSGNEHMGSSAPGSGAGPKIEEVD*

Protein Length: 92

Fln nts: GCTTACAGTATCAGGAATACTGTCTCGGTGTCCGGGGATAAGCTGAATCCGGCGGACAAGGAGAAGATCGACAAGGCCATCAATGGGGCGTTGGAGTGGCTGGACCGCAATCAGCTGGCGGAGGTGGAGGAGTTGGAAGACAAGCTGAAGGAGCTCCAAAGCATTTGCGATCCCATCATCGCAAAGATGTACCAGGGCGGATCAGGCAATGAACATATGGGCTCCTCCGCTCCCGGTTCCGGCGCCGGCCCTAAGATCGAAGAAGTGGATTAG___AGATGGCCCTCTAAAGATCGTGCGGGCTGGTTATAAAGTAGTCTCTTTTGAATATGCAGTCGAAAGAAGTCCAATGCTTACTACTTCCATATGTATAATTTTCCATAATTGGCTG

Fln Alignment:

F51TW9002JEG56___AYSIRNTVSVS--GDKLNPADKEKIDKAINGALEWLDRNQXXXXXXXXXXXXXXQSICDPIIAKMYQGGS
A9NXU2_______________AYNMRNTVRDEKFAGKLDPADKAKIEEAINGAISWLDQNQLAEVDEFEDKMKELEGICNPIIAKMYQGGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain