SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56692

Length: 178 nt

UniGene Fasta

>sp_v3.0_unigene56692
ACACAGAATTTGCAGGGCGGGCTTATAAATATCTCCCATCTGGTAAGCAATTCGCTGGCTATACTCAAGTATATTGTAGCCAGGAATTCGATTCATAATCGCCGCCTGTTATCCGATAATGAAGGCTCCGAGTTCATGGTCATGGAATCGGACGGCTTTCCTTCATGGATGTCAGAGC

Ace file of the UniGene sp_v3.0_unigene56692

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative pectin methylesterase [Picea abies]	-	-	8.0e-11	60%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%

Source	Gene names
Sma3	PME1;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	enzyme inhibitor activity	GO:0004857	Molecular Function	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	-
Sma3	cell wall modification	GO:0042545	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	0.0	-
Sma3	Pectinesterase inhibitor	IPR006501	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT44

Fln msg: Distance to subject end: 328 aas, your sequence is shorter than subject: 59 - 601

Fln protein: TQNLQGGLINISHLVSNSLAILKYIVARNSIHNRRLLSDNEGSEFMVMESDGFPSWMSE

Protein Length: 60

Fln nts: ACACAGAATTTGCAGGGCGGGCTTATAAATATCTCCCATCTGGTAAGCAATTCGCTGGCTATACTCAAGTATATTGTAGCCAGGAATTCGATTCATAATCGCCGCCTGTTATCCGATAATGAAGGCTCCGAGTTCATGGTCATGGAATCGGACGGCTTTCCTTCATGGATGTCAGAGC

Fln Alignment:

F51TW9002HN9KO___QNLQGGLINISHLVSNSLAILKYIVAR------NSIHNRRLLSDNEGSEFMVMESDGFPSWMS
C0PT44_______________QELQGGLMSISHLVSNSLAIVKNIATRASNVTVNSIHNRRLLSDDQGSEFMAMESDGFPSWMS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain