SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56663

Length: 407 nt

UniGene Fasta

>sp_v3.0_unigene56663
ATGGGGAGATCATCAAGAAGCAGATGGCAGAGAAGCCCGCCAACAGGAGAGTCGGCTTCACTTCGTCTGGCGCTCCTGCCCGCGCACACATCGAGATTTTCAGCAAGGAGGGCGACAAGATTGGTGAGGTGACCAGTGGAGCATACAGCCCCACTCTGGGCAAAAATGTGGCAATGGGGTACGTGCCTCGCGACTATGCTAAGAACGGCACAGAGTTCATGGTGGAGGTTCGCGGCAAGCGCAATCCTGCCACCGTGACAAAGATGCCTTTTGTGGACACCACATATTTCAAGGCATGAGCAGTGCGCCGCTGCGCGCACATTTACGGAGTATGTATTCCCAGAGCAATGCTGCTGGTGAGCAGTCGATGCTGGCCCATGATGCTGTGCAAGTAGGAAGAGCGAAAC

Ace file of the UniGene sp_v3.0_unigene56663

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aminomethyltransferase n=1 Tax=Volvox carteri f. nagariensis RepID=D8UF24_VOLCA	-	-	6.0e-28	61%
FL-Next	sp=Aminomethyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Glycine cleavage system T protein	-	-	2.651e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.1.2.1-	-	1.037e-27	-

Source	Gene names
Sma3	At1g11860; CHLREDRAFT_196242; F12F1.30; GCST; GDCST; GDCT; GSVIVT00010970001; H0215F08.10; MA4_106O17.6; MICPUN_59804; OSJNBa0053K19.11; OSTLU_26241; Os04g0623800; OsI_17482; OsJ_16220; Ot10g02850; PHYPADRAFT_131811; PHYPADRAFT_67193; RCOM_0903840; gdcT1;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	glycine cleavage complex	GO:0005960	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	aminomethyltransferase activity	GO:0004047	Molecular Function	-
Sma3	transaminase activity	GO:0008483	Molecular Function	-
Sma3	glycine catabolic process	GO:0006546	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycine cleavage T-protein, N-terminal	IPR006222	-	-
Sma3	Glycine cleavage system T protein	IPR006223	-	-
Sma3	Glycine cleavage T-protein, C-terminal barrel	IPR013977	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G11860.1	Glycine cleavage T-protein family chr1:4001801-4003245 FORWARD LENGTH=408	1.0e-27	52%
RefSeq	Arabidopsis thaliana	NP_001184969.1	aminomethyltransferase [Arabidopsis thaliana]	1.0e-27	52%
RefSeq	Populus trichocarpa	XP_002316546.1	precursor of carboxylase t-protein 1, glycine decarboxylase complex [Populus trichocarpa]	2.0e-26	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A852

Fln msg: your sequence is shorter than subject: 99 - 411

Fln protein: GEIIKKQMAEKPANRRVGFTSSGAPARAHIEIFSKEGDKIGEVTSGAYSPTLGKNVAMGYVPRDYAKNGTEFMVEVRGKRNPATVTKMPFVDTTYFKA*

Protein Length: 100

Fln nts: ATGGGGAGATCATCAAGAAGCAGATGGCAGAGAAGCCCGCCAACAGGAGAGTCGGCTTCACTTCGTCTGGCGCTCCTGCCCGCGCACACATCGAGATTTTCAGCAAGGAGGGCGACAAGATTGGTGAGGTGACCAGTGGAGCATACAGCCCCACTCTGGGCAAAAATGTGGCAATGGGGTACGTGCCTCGCGACTATGCTAAGAACGGCACAGAGTTCATGGTGGAGGTTCGCGGCAAGCGCAATCCTGCCACCGTGACAAAGATGCCTTTTGTGGACACCACATATTTCAAGGCATGA___GCAGTGCGCCGCTGCGCGCACATTTACGGAGTATGTATTCCCAGAGCAATGCTGCTGGTGAGCAGTCGATGCTGGCCCATGATGCTGTGCAAGTAGGAAGAGCGAAAC

Fln Alignment:

F51TW9002G79RZ___EIIKKQMAEKPANRRVGFTSSGAPARAHIEIFSKEGDKIGEVTSGAYSPTLGKNVAMGYVPRDYAKNGTEFMVEVRGKRNPATVTKMPFVDTTYFK
D5A852_______________EVILKQLEEGPARRRVGMISAGPPPRSHSEIMDASGNPIGEVTSGGFSPCLKKNISMGYVKSGNHKTGSELKVLVRGKPYDATVTKMPFVPAKYYK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain