SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56648

Length: 279 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene56648
ACTCTGGAAGTGGAGAGCTCGGAATACCATTGACAATGTAAAAGCTAAGATCCAGGGACAAGGAGGGAATCCCACCCTGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTAGAAGATGGTCGTACTCTGGCCGATTACAACATTCAGAAGGAGTCGACCCTTCACCTGGTGCTCCGTCTCCGTGGTGGCTTTAGGTTGGCTGTTGTGTGTCAATGTAGTCTGGTGATGTTCAGTGGTTTCCTGCTTAATGCTTTATGTATGTGTATGTGTTTGTTG

Ace file of the UniGene sp_v3.0_unigene56648 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[O] COG5272 Ubiquitin	-	-	2.0e-17	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%

Source	Gene names
Sma3	AT5G03240; At1g55060; At4g02890; At4g05050; At4g05320; At5g03240; At5g20620; At5g37640; B1472F02.6; CHLREDRAFT_140045; EgUbi; FUBI1; GSVIVT00027151001; GSVIVT00035709001; GUbB1; GUbB2; H0303G06.8; LOC_Os03g13170; MICPUCDRAFT_28921; MICPUN_60632; MtrDRAFT_

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	superoxide dismutase activity	GO:0004784	Molecular Function	-
Sma3	nickel cation binding	GO:0016151	Molecular Function	-
Sma3	antioxidant activity	GO:0016209	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-
Sma3	Superoxide dismutase, Nickel-type	IPR014123	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G05050.1	UBQ11 ubiquitin 11 chr4:2588271-2588960 REVERSE LENGTH=229	2.0e-21	73%
RefSeq	Arabidopsis thaliana	NP_001190681.1	ubiquitin 11 [Arabidopsis thaliana]	9.0e-22	73%
RefSeq	Populus trichocarpa	XP_002307191.1	predicted protein [Populus trichocarpa]	1.0e-21	71%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPR6

Fln msg: warning!, putative chimeric sequence! or repetitive structure STOP codon was not found. Distance to subject end: 9 aas, atg_distance in limit (1-15): atg_distance = 14, W2: There is no M at the beginning, your sequence is shorter than subject: 93 - 252

Fln protein: TLEVESSEYH*QCKS*DPGTRRESHPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGFRLAVVCQCSLVMFSGFLLNALCMCMCLL

Protein Length: 94

Fln nts: ACTCTGGAAGTGGAGAGCTCGGAATACCATTGACAATGTAAAAGCTAAGATCCAGGGACAAGGAGGGAATCCCACCCTGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTAGAAGATGGTCGTACTCTGGCCGATTACAACATTCAGAAGGAGTCGACCCTTCACCTGGTGCTCCGTCTCCGTGGTGGCTTTAGGTTGGCTGTTGTGTGTCAATGTAGTCTGGTGATGTTCAGTGGTTTCCTGCTTAATGCTTTATGTATGTGTATGTGTTTGTTG

Fln Alignment:

F51TW9002HGXEE___TLEVESSEYH*QCKS*DPGTRRESHPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGFRLAV
C0PPR6_______________SLEVESSDIIDNLKA-DIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain