UniGene Name: sp_v3.0_unigene56591
Length: 102 nt
UniGene Fasta |
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>sp_v3.0_unigene56591
G |
Ace file of the UniGene sp_v3.0_unigene56591 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | Putative DNA repair protein n=1 Tax=Ipomoea trifida RepID=Q6JJ38_IPOTF | - | - | 5.0e-11 | 100% |
FL-Next | sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). | - | - | 0.0 | 96% |
Sma3 | DNA repair helicase rad5,16, putative | - | - | 2.361e-07 | - |
Source | Gene names |
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Sma3 | At5g22750; At5g43530; CHR1526; CHR903; GSVIVT00020178001; GSVIVT00022099001; K9D7.2; MDJ22.17; OSJNBa0096F01.3; Os02g0527100; Os04g0177300; OsI_07472; OsI_15041; OsJ_06974; OsJ_13993; P0458B05.20; PHYPADRAFT_105578; POPTRDRAFT_293462; RCOM_0492090; RCOM_1 |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
Sma3 | chloroplast envelope | GO:0009941 | Cellular Component | 0.0 | - |
Sma3 | DNA binding | GO:0003677 | Molecular Function | 0.0 | - |
Sma3 | helicase activity | GO:0004386 | Molecular Function | 0.0 | - |
Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
Sma3 | zinc ion binding | GO:0008270 | Molecular Function | 0.0 | - |
Sma3 | DNA repair | GO:0006281 | Biological Process | 0.0 | - |
Sma3 | DNA mediated transformation | GO:0009294 | Biological Process | 0.0 | - |
Sma3 | chromatin modification | GO:0016568 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | SNF2-related | IPR000330 | - | 0.0 | - |
Sma3 | Ubiquitin-associated/translation elongation factor EF1B, N-terminal | IPR000449 | - | 0.0 | - |
Sma3 | Helicase, C-terminal | IPR001650 | - | 0.0 | - |
Sma3 | Zinc finger, RING-type | IPR001841 | - | 0.0 | - |
Sma3 | DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site | IPR002464 | - | 0.0 | - |
Sma3 | Helicase, superfamily 1/2, ATP-binding domain | IPR014001 | - | 0.0 | - |
Sma3 | IPR014021 | - | 0.0 | - | |
Sma3 | HIP116, Rad5p N-terminal | IPR014905 | - | 0.0 | - |
Sma3 | Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote | IPR015940 | - | 0.0 | - |
Sma3 | Zinc finger, RING-type, conserved site | IPR017907 | - | 0.0 | - |
Sma3 | Zinc finger, C3HC4 RING-type | IPR018957 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT5G22750.1 | RAD5, RAD5A DNA/RNA helicase protein chr5:7565374-7570871 REVERSE LENGTH=1029 | 2.0e-15 | 96% |
RefSeq | Arabidopsis thaliana | NP_197667.1 | DNA/RNA helicase protein RAD5 [Arabidopsis thaliana] | 2.0e-15 | 96% |
RefSeq | Populus trichocarpa | XP_002328182.1 | chromatin remodeling complex subunit, partial [Populus trichocarpa] | 8.0e-16 | 100% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: sp_plants
Fln subject: Q9FNI6
Fln msg: Distance to subject end: 294 aas, your sequence is shorter than subject: 33 - 1029
Fln protein:
S
Protein Length:
34
Fln nts:
G
Fln Alignment:
F51TW9001BLWOZ___SKVKFDQFVEQGRVLHNYASILELLLRLRQCCD
Q9FNI6_______________SKVKFDQFVEQGKVLHNYASILELLLRLRQCCD
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain