SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56556

Length: 283 nt

UniGene Fasta

>sp_v3.0_unigene56556
ATGGGGGAGCAGTGTTGGCTCTTGCTATTGTAGCAATAGCCTTTTATGCTTTGAAGCAAAAGAAAAAAGCTGATCTGGCCGTTCAAATCCACAAACCATTCGCATCATGGGGAACGAGTGGTCAAGATGGTGGAGGTGCTCCTAGACTGAAAGGTGCCAGATGGTTTTCCTCGCCGAAATAAAGAAGGTTACGAATAATTTCTCTGACAGTAACGAAATCGGAACAGGAGGATATGGCAAGGTGTACAAAGCAATGCTAGATGGAGGAGAAATGGTGGCCATT

Ace file of the UniGene sp_v3.0_unigene56556

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] dbj\|BAC42504.1\| unknown protein [Arabidopsis thaliana] gb\|ACN59279.1\| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gb\|AEE36273.1\| leucine-rich repeat protein	-	-	5.0e-20	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%

Source	Gene names
Sma3	GSVIVT00035380001; VITISV_004150;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G79620.1	Leucine-rich repeat protein kinase family protein chr1:29957633-29962174 REVERSE LENGTH=971	3.0e-22	59%
RefSeq	Arabidopsis thaliana	NP_178080.2	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	4.0e-22	59%
RefSeq	Populus trichocarpa	XP_002326254.1	predicted protein [Populus trichocarpa]	6.0e-23	66%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9B2

Fln msg: Distance to subject end: 259 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 41 - 338

Fln protein: MVFLAEIKKVTNNFSDSNEIGTGGYGKVYKAMLDGGEMVAI

Protein Length: 42

Fln nts: ATGGGGGAGCAGTGTTGGCTCTTGCTATTGTAGCAATAGCCTTTTATGCTTTGAAGCAAAAGAAAAAAGCTGATCTGGCCGTTCAAATCCACAAACCATTCGCATCATGGGGAACGAGTGGTCAAGATGGTGGAGGTGCTCCTAGACTGAAAGGTGCCAG_-_ATGGTTTTCCTCGCCGAAATAAAGAAGGTTACGAATAATTTCTCTGACAGTAACGAAATCGGAACAGGAGGATATGGCAAGGTGTACAAAGCAATGCTAGATGGAGGAGAAATGGTGGCCATT

Fln Alignment:

F51TW9001EX7SM___EIKKVTNNFSDSNEIGTGGYGKVYKAMLDGGEMVAI
D5A9B2_______________ELRRVTNDFSNTNVIGIGGCGRVYKAMLDDGQVVAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain