SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56554

Length: 240 nt

UniGene Fasta

>sp_v3.0_unigene56554
ATGGGGAACGGTGGAAAATTTCCTGCGTTTGTGGAAGTTATAGCATTTGCATTTCTCCCGTGAGTAGTATCAGTTGTGTTTTGAGTCGAGAGGAGTATCAGTTTTGTTCTGAGGAAAGAGGAGGTAAAGATTGAGGTGGAAGACAACCGAGTTTTAAAGATAAGCGGTGAACGCAAGAAAGAAGAAGAGCAAAAGAACGACCAGTGGCACCGAATTGAGCGGTCCTACGGCAAATTTCTG

Ace file of the UniGene sp_v3.0_unigene56554

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	22.0 kDa class IV heat shock protein n=3 Tax=Glycine max RepID=HSP41_SOYBN	-	-	2.0e-13	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Heat-shock protein, putative	-	-	2.759e-34	-

Source	Gene names
Sma3	AT4g10250; At1g53540; At2g29500; At3g46230; At4g10250; At5g59720; BcHSP; BcHSP17.6; CJHSP17; F12M12_200; F22G10.20; F24G24.50; GSVIVT00001312001; GSVIVT00018308001; GSVIVT00018328001; GSVIVT00018349001; GSVIVT00024197001; GSVIVT00031948001; Gmhsp22.5; HS6

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	heat acclimation	GO:0010286	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	-
Sma3	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	IPR011056	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G10250.1	ATHSP22.0 HSP20-like chaperones superfamily protein chr4:6370537-6371124 FORWARD LENGTH=195	1.0e-18	76%
RefSeq	Arabidopsis thaliana	NP_192763.1	heat shock protein 22 [Arabidopsis thaliana]	2.0e-18	76%
RefSeq	Populus trichocarpa	XP_002319884.1	predicted protein [Populus trichocarpa]	2.0e-18	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NL13

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 44 aas, your sequence is shorter than subject: 80 - 151

Fln protein: MGNGGKFPAFVEVIAFAFLP*VVSVVF*VERSISFVLRKEEVKIEVEDNRVLKISGERKKEEEQKNDQWHRIERSYGKFL

Protein Length: 81

Fln nts: ATGGGGAACGGTGGAAAATTTCCTGCGTTTGTGGAAGTTATAGCATTTGCATTTCTCCCGTGAGTAGTATCAGTTGTGTTTTGAGTCGAGAGGAGTATCAGTTTTGTTCTGAGGAAAGAGGAGGTAAAGATTGAGGTGGAAGACAACCGAGTTTTAAAGATAAGCGGTGAACGCAAGAAAGAAGAAGAGCAAAAGAACGACCAGTGGCACCGAATTGAGCGGTCCTACGGCAAATTTCTG

Fln Alignment:

F51TW9001ADNA0___LRKEEVKIEVEDNRVLKISGERKKEEEQKNDQWHRIERSYGKFL
A9NL13_______________LRKEEVKIEVEDDRVLKISGERKKEEEQKNDKWHRIERSYGKFL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain