SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56552

Length: 245 nt

UniGene Fasta

>sp_v3.0_unigene56552
ATGGGAAGGTGAAAATAGGCACAATGGTTGCACAAAAAGAAACAAAGGCAGAGAAGTGGGAGACTCGTCAATAATTGAAAGAAGACCAGAAAGCTTAGGTGGAAGCAACTATTATTAGGATTATGAAAGCTAGGTGTGTTTTAGACCATAATAAATCTAGACACGAGTTTGAATCCCCTTGTGCATTAGTCACTCAAGTGTTTTCCAACTCTCAGGTGGAATTGAACACCTGAAAACTGTGTCAT

Ace file of the UniGene sp_v3.0_unigene56552

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cullin 3B [Arabidopsis thaliana] sp\|Q9C9L0.1\|CUL3B_ARATH RecName: Full=Cullin-3B; Short=AtCUL3b gb\|AAG52544.1\|AC013289_11 putative cullin; 66460-68733 [Arabidopsis thaliana] gb\|AEE34961.1\| cullin 3B [Arabidopsis thaliana]	-	-	1.0e-10	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%

Source	Gene names
Sma3	At1g26830; At1g69670; GSVIVT00020935001; GSVIVT00036990001; H0306F03.4; OJ1118_G04.26; OJ1590_E05.14; OSJNBa0033G05.2; OSJNBa0063C18.16; OSJNBb0024K03.4; Os02g0746000; Os04g0643000; Os08g0170900; OsI_08927; OsI_17639; OsI_27980; OsJ_08372; OsJ_16378; OsJ_

Source	GOs	Term	Type	Identity
Sma3	cullin-RING ubiquitin ligase complex	GO:0031461	Cellular Component	-
Sma3	ubiquitin protein ligase binding	GO:0031625	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Cullin homology	IPR016158	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G69670.1	CUL3B, ATCUL3B cullin 3B chr1:26202169-26204442 REVERSE LENGTH=732	2.0e-14	69%
RefSeq	Arabidopsis thaliana	NP_177125.3	cullin 3B [Arabidopsis thaliana]	3.0e-14	69%
RefSeq	Populus trichocarpa	XP_002315795.1	predicted protein [Populus trichocarpa]	9.0e-14	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNS8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 17 aas, your sequence is shorter than subject: 77 - 735

Fln protein: GKVKIGTMVAQKETKAEKWETRQ*LKEDQKA*VEATIIRIMKARCVLDHNKSRHEFESPCALVTQVFSNSQVELNT*

Protein Length: 78

Fln nts: ATGGGAAGGTGAAAATAGGCACAATGGTTGCACAAAAAGAAACAAAGGCAGAGAAGTGGGAGACTCGTCAATAATTGAAAGAAGACCAGAAAGCTTAGGTGGAAGCAACTATTATTAGGATTATGAAAGCTAGGTGTGTTTTAGACCATAATAAATCTAGACACGAGTTTGAATCCCCTTGTGCATTAGTCACTCAAGTGTTTTCCAACTCTCAGGTGGAATTGAACACCTGAAAACTGTGTCAT

Fln Alignment:

F51TW9001D3HR8___KVKIGTMVAQKETKAEKWETRQ*LKEDQKA*VEATIIRIMKARCVLDHN
B8LNS8_______________KVKIGTVAAQKETEPEKQETRQRVEEDRKPQIEAAIVRIMKARRVLDHN

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain