SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56540

Length: 205 nt

UniGene Fasta

>sp_v3.0_unigene56540
ATGGGTGGTGGTAAAAGGATTTGCCCAAAAAGAAGGTATTGACTTCACTGATTTTCTCACTTATTGTTAAAATCTCATCCATTAGAGTCATTCTGGTCTTGTTGATGCTTTAGACTTAGAATGTGAATAGTTAGATGTAAAGGCTGCTTTCTTTCATGGTGAATTGGAGGAAGAAATTATATGGAGCAACCATAATGCTTCATGG

Ace file of the UniGene sp_v3.0_unigene56540

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR	-	-	8.0e-06	54%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	44%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: Distance to subject end: 337 aas, your sequence is shorter than subject: 68 - 542

Fln protein: WVVVKGFAQKEGIDFTDFLTYC*NLIH*SHSGLVDALDLECE*LDVKAAFFHGELEEEIIWSNHNASW

Protein Length: 69

Fln nts: ATGGGTGGTGGTAAAAGGATTTGCCCAAAAAGAAGGTATTGACTTCACTGATTTTCTCACTTATTGTTAAAATCTCATCCATTAGAGTCATTCTGGTCTTGTTGATGCTTTAGACTTAGAATGTGAATAGTTAGATGTAAAGGCTGCTTTCTTTCATGGTGAATTGGAGGAAGAAATTATATGGAGCAACCATAATGCTTCATGG

Fln Alignment:

F51TW9001E08KE___VVVKGFAQKEGIDFTDFLTYC*NLIH*SHS-GLVDALDLECE*LDVKAAFFHGELEEEI
Q9M5J7_______________LVEKGYSQVEGIEFGEIFSPVAKLTSIRFLLSIVVAFDLEVEQMDVKTTFLHGDLEEEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain