SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56518

Length: 152 nt

UniGene Fasta

>sp_v3.0_unigene56518
AAGTGCTGCACCATATGTTCTGATGTCAAATATTTATGCTACTGCTGGCAGGTGGGATGACATTGAGAAGGTACGAAAATTGATGAAAGATAGAAATGTAACGAAGAATCCAGGATGCAGTTGGATTGAAATTAATAAAAGTATATATGCTT

Ace file of the UniGene sp_v3.0_unigene56518

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SI53.1\|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g03880, mitochondrial; Flags: Precursor gb\|AAD24821.1\| putative selenium-binding protein [Arabidopsis t	-	-	7.0e-11	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%

Source	Gene names
Sma3	GSVIVT00014458001; GSVIVT00036891001; PPR; VITISV_032319;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G03880.1	REME1 Pentatricopeptide repeat (PPR) superfamily protein chr2:1181560-1183452 FORWARD LENGTH=630	3.0e-15	55%
RefSeq	Arabidopsis thaliana	NP_178481.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	3.0e-15	55%
RefSeq	Populus trichocarpa	XP_002302000.1	predicted protein [Populus trichocarpa]	1.0e-15	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 121 aas, your sequence is shorter than subject: 50 - 246

Fln protein: SAAPYVLMSNIYATAGRWDDIEKVRKLMKDRNVTKNPGCSWIEINKSIYA

Protein Length: 51

Fln nts: AAGTGCTGCACCATATGTTCTGATGTCAAATATTTATGCTACTGCTGGCAGGTGGGATGACATTGAGAAGGTACGAAAATTGATGAAAGATAGAAATGTAACGAAGAATCCAGGATGCAGTTGGATTGAAATTAATAAAAGTATATATGCTT

Fln Alignment:

F51TW9001BOY4S___SAAPYVLMSNIYATAGRWDDIEKVRKLMKDRNVTKNPGCSWIEINKSIY
D5AAE0_______________NAAKYVLLSNIYAAAGRWDDVAKVRKIMKDRGVQKQPGCSWIEVKNKVH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain