SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56475

Length: 363 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene56475
GAGGAGGAGATCTATATCGAGCAGTTGAAAGGGCTCAAGGCACATAGTAGGGAAACATGTGTGCAAGCTGAAGAGGGCTTTTGTATGGGCTCAACCAGGCTCCACAGGCGTGGTATGCCCACATTGAGAACTATCTACAAGGATTGGGCTTCACAAAAAGTGAGGCGGATTCCAACCTCTACTACATCATTGTTGGAGGTGTACTATTCATTCTAGTACTATATGTTGATGGTTTGTTCATGATAGGGTCATAGAAGCCCATCCAAGAGTGCAAGATAGATCTTGCATGTGAGTTTGAGATGAAGGATCTAGGGCTTATGCACTATTTCCTTGGATTGGAGGTTTGGTAAGGGGATGGAGAGA

Ace file of the UniGene sp_v3.0_unigene56475 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=4 Tax=Ginkgo biloba RepID=Q06290_GINBI	-	-	7.0e-16	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	Reverse transcriptase	-	-	1.75e-12	-

Source	Gene names
Sma3	pol;

Source	GOs	Term	Type	e value	Identity
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 139 aas, your sequence is shorter than subject: 116 - 363

Fln protein: GGDLYRAVERAQGT**GNMCAS*RGLLYGLNQAPQAWYAHIENYLQGLGFTKSEADSNLYYIIVGGVLFILVLYVDGLFMIGS*KPIQECKIDLACEFEMKDLGLMHYFLGLEVW*

Protein Length: 117

Fln nts: GAGGAGGAGATCTATATCGAGCAGTTGAAAGGGCTCAAGGCACATAGTAGGGAAACATGTGTGCAAGCTGAAGAGGGCTTTTGTATGGGCTCAACCAGGCTCCACAGGCGTGGTATGCCCACATTGAGAACTATCTACAAGGATTGGGCTTCACAAAAAGTGAGGCGGATTCCAACCTCTACTACATCATTGTTGGAGGTGTACTATTCATTCTAGTACTATATGTTGATGGTTTGTTCATGATAGGGTCATAGAAGCCCATCCAAGAGTGCAAGATAGATCTTGCATGTGAGTTTGAGATGAAGGATCTAGGGCTTATGCACTATTTCCTTGGATTGGAGGTTTGGTAAGGGGATGGAGAGA

Fln Alignment:

F51TW9001C2N8A___LYGLNQAPQAWYAHIENYLQGLGFTKSEADSNLY-YIIVGGVLFILVLYVDGLFMIGS*KPIQECKIDLACEFEMKDLGLMHYFLGLEV
B8LKV8_______________LNGLKQAPRAWYSKIDSYMIKNEFIRSTSEPTLYTKVNEQGQILIVCLYVDDLIYTGN-LTIDMFKSAMKKEFEMTDLGLMNYFLGIEV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain