SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56420

Length: 217 nt

UniGene Fasta

>sp_v3.0_unigene56420
AAGAGCATAGGATGCAGTTGGATTGAGATCAAGAACAAGGTTCATGCTTTCGTTGTAGCAGACAGATCACACCCACAGTCATCGGAAATCTATGGACTGTTGGAGAAGTTGGAAAGGCAGATGAAAGCCGAAGGTATGTTGCGGACACAAGCTTTGTGCTACATGATGTACAAGAGGAAGAGAAGAGATATGCCATCTGCAGCCACAGTGAGAAGTT

Ace file of the UniGene sp_v3.0_unigene56420

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE	-	-	2.0e-15	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G57430.1	OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein chr3:21255731-21258403 REVERSE LENGTH=890	2.0e-14	53%
RefSeq	Arabidopsis thaliana	NP_191302.2	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	3.0e-14	53%
RefSeq	Populus trichocarpa	XP_002321443.1	predicted protein [Populus trichocarpa]	1.0e-14	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Overlapping hits, possible frame ERROR between 141 and 135, Distance to subject end: 64 aas, your sequence is shorter than subject: 72 - 370

Fln protein: KSIGCSWIEIKNKVHAFVVADRSHPQSSEIYGLLEKLERQMKAExxxxDTSFVLHDVQEEEKRYAICSHSEK

Protein Length: 73

Fln nts: AAGAGCATAGGATGCAGTTGGATTGAGATCAAGAACAAGGTTCATGCTTTCGTTGTAGCAGACAGATCACACCCACAGTCATCGGAAATCTATGGACTGTTGGAGAAGTTGGAAAGGCAGATGAAAGCCGAAxxxxxxxxxxxxGACACAAGCTTTGTGCTACATGATGTACAAGAGGAAGAGAAGAGATATGCCATCTGCAGCCACAGTGAGAAGTT

Fln Alignment:

F51TW9001BXKGV___KSIGCSWIEIKNKVHAFVVADRSHPQSSEIYGLLEKLERQMKAEGxxADTSFVLHDVQEEEKRYAICSHSEK
A9P0W0_______________KEPGCSWIEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGxxPNTNFVLHDVEEEQKEWILGHHSEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain