SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56418

Length: 170 nt

UniGene Fasta

>sp_v3.0_unigene56418
TGTCCTTTCGGTACTTCGGATCTATTGGGCTATTTAGTGCACTTGGAGTGAAGTCCACTTTAATTATTGTTGAAGTTATTCCATTTCTAGTGCTTGCGGTGGGAGTTGACAATATGTGTCATCTTAGTGCATGCACTTAAACGCCAAGCCAGTCGAATTTGGCCTTGGAA

Ace file of the UniGene sp_v3.0_unigene56418

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Patched family protein n=1 Tax=Arabidopsis thaliana RepID=F4JTN1_ARATH	-	-	1.0e-09	88%
FL-Next	tr=Putative uncharacterized protein AT4g38350; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	88%
Sma3	Cholesterol transport protein	-	-	1.777e-09	-

Source	Gene names
Sma3	AT4g38350; F22I13.120; GSVIVT00002883001; GSVIVT00036266001; H0409D10.4; OSJNBb0078D11.11; OsI_16991; PHYPADRAFT_113528; PHYPADRAFT_132440; POPTRDRAFT_721264; POPTRDRAFT_818865; RCOM_1601160; VITISV_009389;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	hedgehog receptor activity	GO:0008158	Molecular Function	-
Sma3	cholesterol transport	GO:0030301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sterol-sensing domain	IPR000731	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Patched	IPR003392	-	-
Sma3	Niemann-Pick C type protein	IPR004765	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G38350.2	Patched family protein chr4:17958324-17966846 REVERSE LENGTH=1297	1.0e-13	88%
RefSeq	Arabidopsis thaliana	NP_195548.6	Patched family protein [Arabidopsis thaliana]	1.0e-13	88%
RefSeq	Populus trichocarpa	XP_002307793.1	cholesterol transport protein [Populus trichocarpa]	3.0e-13	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9SVF0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 411 aas, your sequence is shorter than subject: 46 - 1055

Fln protein: SFRYFGSIGLFSALGVKSTLIIVEVIPFLVLAVGVDNMCHLSACT*

Protein Length: 47

Fln nts: TGTCCTTTCGGTACTTCGGATCTATTGGGCTATTTAGTGCACTTGGAGTGAAGTCCACTTTAATTATTGTTGAAGTTATTCCATTTCTAGTGCTTGCGGTGGGAGTTGACAATATGTGTCATCTTAGTGCATGCACTTAAACGCCAAGCCAGTCGAATTTGGCCTTGGAA

Fln Alignment:

F51TW9001C1LPW___GSIGLFSALGVKSTLIIVEVIPFLVLAVGVDNMCHL
Q9SVF0_______________GSVGVFSALGVKSTLIIMEVIPFLVLAVGVDNMCIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain