SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56408

Length: 356 nt

UniGene Fasta

>sp_v3.0_unigene56408
GATGTCAAAATGCCATTTTTGAACAATGTGATAGAAGAAGAAGTATACATTGAACAACCAGAGGGCTTTGAGACACATGAGAAGAAGTCTCATGTATGCAGATTGAAGAAAGCCTTGTATGGGCTGAAACAGGCACTTAGAGCATGGTATGGGCGAATTGATGGCTACTTGCAAAAAATGGGATTTGTCAAGAGTGATGCAGATCCAAATCTCTACTATCTGGTTGTAGAGAATGAGCCTCTAATCTTAGTATTATATGTGGATGATCTCTTCCTGACAGGATCATCTAGGCTCATAGGGGACTGCAAGAAGAATTTAGCCACGAGTTTGACATGAAGGATTTCAGACGAATGCAT

Ace file of the UniGene sp_v3.0_unigene56408

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=4 Tax=Ginkgo biloba RepID=Q06290_GINBI	-	-	8.0e-32	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Reverse transcriptase	-	-	1.067e-17	-

Source	Gene names
Sma3	AP2_E11.1; At2g15650; At2g17490; F11I4_21; H0112G12.6; LOC_Os03g01684; LOC_Os03g13260; LOC_Os03g26290; LOC_Os03g61660; LOC_Os03g63124; LOC_Os12g05520; LOC_Os12g44200; OSJNBa0007C23.1; OSJNBa0009C08.22; OSJNBa0013O08.17; OSJNBa0017O06.12; OSJNBa0049D13.12;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR010256	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 151 aas, your sequence is shorter than subject: 112 - 363

Fln protein: DVKMPFLNNVIEEEVYIEQPEGFETHEKKSHVCRLKKALYGLKQALRAWYGRIDGYLQKMGFVKSDADPNLYYLVVENEPLILVLYVDDLFLTGSSRLIGDCKKNLATSLT*

Protein Length: 113

Fln nts: GATGTCAAAATGCCATTTTTGAACAATGTGATAGAAGAAGAAGTATACATTGAACAACCAGAGGGCTTTGAGACACATGAGAAGAAGTCTCATGTATGCAGATTGAAGAAAGCCTTGTATGGGCTGAAACAGGCACTTAGAGCATGGTATGGGCGAATTGATGGCTACTTGCAAAAAATGGGATTTGTCAAGAGTGATGCAGATCCAAATCTCTACTATCTGGTTGTAGAGAATGAGCCTCTAATCTTAGTATTATATGTGGATGATCTCTTCCTGACAGGATCATCTAGGCTCATAGGGGACTGCAAGAAGAATTTAGCCACGAGTTTGACATGAAGGATTTCAGACGAATGCAT

Fln Alignment:

F51TW9001ES32D___DVKMPFLNNVIEEEVYIEQPEGFETHEKKSHVCRLKKALYGLKQALRAWYGRIDGYLQKMGFVKSDADPNLYYLVVE-NEPLILVLYVDDLFLTGS
B8LKV8_______________DVKSAFLNGYLEEEVYVQQPPRYEVRGQEDKVYRLKKALNGLKQAPRAWYSKIDSYMIKNEFIRSTSEPTLYTKVNEQGQILIVCLYVDDLIYTGN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain