SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56399

Length: 300 nt

UniGene Fasta

>sp_v3.0_unigene56399
GAGATGTCTTTTGGAAATGCAGTGAAGTGTTGCAGAGGTGTTTTTTGGAAATAAGCGGAGAAAGGCACAAAGAAGATGTGCAGGAGACGGACCAGTGACACCGTGTGGAACGGTCGAGTGGACGATTCATGAGGCAATTCCGGCTACCAGATAATGTGAATGCGGATGGCATCTCTGCAAAATTGGAAAACGGTGTTTTGACTGTGAATGCTCCGAAGATTAAAGCGGCAGTTGTCTCTAATGGTGATGCCAAACATGTTGAGATTTCTGTAAGTGACAAGTAAAAGAGAGCCATTGTAA

Ace file of the UniGene sp_v3.0_unigene56399

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	17.4 kDa class I heat shock protein 3 n=2 Tax=Andropogoneae RepID=B4F976_MAIZE	-	-	1.0e-15	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	17.4 kDa class I heat shock protein 3	-	-	2.226e-15	-

Source	Gene names
Sma3	AT4g10250; At4g10250; F24G24.50; HSP16.5I; HSP17.2IC; HSP17.6; HSP17.9; HSP18; HSP18.0; HSP22.0; HSP6834-A; HspI; LMWHSP1; LMWHSP4; LOC_Os01g04370; LOC_Os03g15960; LOC_Os03g16030; MtrDRAFT_AC149642g18v2; OJ1364E02.11; OJ1364E02.6; Os01g0136100; Os03g02663

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	response to stress	GO:0006950	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G29500.1	HSP20-like chaperones superfamily protein chr2:12633279-12633740 REVERSE LENGTH=153	7.0e-20	51%
RefSeq	Arabidopsis thaliana	NP_180511.1	HSP20 family protein [Arabidopsis thaliana]	9.0e-20	51%
RefSeq	Populus trichocarpa	XP_002337678.1	predicted protein [Populus trichocarpa]	3.0e-21	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1C1

Fln msg: your sequence is shorter than subject: 94 - 176

Fln protein: DVFWKCSEVLQRCFLEISGERHKEDVQETDQ*HRVERSSGRFMRQFRLPDNVNADGISAKLENGVLTVNAPKIKAAVVSNGDAKHVEISVSDK*

Protein Length: 95

Fln nts: GAGATGTCTTTTGGAAATGCAGTGAAGTGTTGCAGAGGTGTTTTTTGGAAATAAGCGGAGAAAGGCACAAAGAAGATGTGCAGGAGACGGACCAGTGACACCGTGTGGAACGGTCGAGTGGACGATTCATGAGGCAATTCCGGCTACCAGATAATGTGAATGCGGATGGCATCTCTGCAAAATTGGAAAACGGTGTTTTGACTGTGAATGCTCCGAAGATTAAAGCGGCAGTTGTCTCTAATGGTGATGCCAAACATGTTGAGATTTCTGTAAGTGACAAGTAA___AAGAGAGCCATTGTAA

Fln Alignment:

F51TW9001B933B___EVLQRCFLEISGERHKEDVQETDQ*HRVERSSGRFMRQFRLPDNVNADGISAKLENGVLTVNAPKIKAAVVSNGDAKHVEISVSDK
A9P1C1_______________ELVEKNNLRISGERHKEDVQDTDQWHRVERSSGRFMRQFRLPENVNSDGISAKLENGVLTVNAPKIKPEGVSNGDVRSIDISASDK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain