SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56348

Length: 217 nt

UniGene Fasta

>sp_v3.0_unigene56348
ATGGGGGTCCATGGAGGATAAGATTCACGAAGACCGAGAAATGAGCGGCAGAGGGCGCATGTGGTCTCTGGATCAGAAAATAGACGAGCCCATTCAAGATGCAGACGCCGAGCATGTGACAGCCATGGACACAAGAGAGGGGTTTTCAGCTTTAATGGTTCTGCGTCTTGCATTTCAGAGTTTTGGAGTTGTTTATGGAGACTTGGGAACATCTCCA

Ace file of the UniGene sp_v3.0_unigene56348

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Putative potassium transporter 12; AltName: Full=OsHAK12 emb\|CAD21002.1\| putative potasium transporter [Oryza sativa Japonica Group] gb\|EAZ41864.1\| hypothetical protein OsJ_26409 [Oryza sativa Japonica Group]	-	-	1.0e-10	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	K+ potassium transporter	IPR003855	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G19960.1	KUP9, ATKUP9, HAK9, KT9 K+ uptake permease 9 chr4:10813807-10816997 FORWARD LENGTH=823	2.0e-14	53%
RefSeq	Arabidopsis thaliana	NP_001190775.1	K+ uptake permease 9 [Arabidopsis thaliana]	3.0e-14	53%
RefSeq	Populus trichocarpa	XP_002303503.1	predicted protein [Populus trichocarpa]	2.0e-15	54%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P149

Fln msg: Distance to subject end: 150 aas, atg_distance in limit (1-15): atg_distance = 4, your sequence is shorter than subject: 69 - 225

Fln protein: MEDKIHEDREMSGRGRMWSLDQKIDEPIQDADAEHVTAMDTREGFSALMVLRLAFQSFGVVYGDLGTSP

Protein Length: 70

Fln nts: ATGGGGGTCC_-_ATGGAGGATAAGATTCACGAAGACCGAGAAATGAGCGGCAGAGGGCGCATGTGGTCTCTGGATCAGAAAATAGACGAGCCCATTCAAGATGCAGACGCCGAGCATGTGACAGCCATGGACACAAGAGAGGGGTTTTCAGCTTTAATGGTTCTGCGTCTTGCATTTCAGAGTTTTGGAGTTGTTTATGGAGACTTGGGAACATCTCCA

Fln Alignment:

F51TW9001ERIFR___SGRGRMWSLDQKIDEPIQDADAEHVTAMDTREGFSALMVLRLAFQSFGVVYGDLGTSP
A9P149_______________SGRGRIWSLDQKIDQPIKDAEAGHVTAMDARKELSALMILRLAFHSFGVVYGDLGTSP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain