SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56020

Length: 236 nt

UniGene Fasta

>sp_v3.0_unigene56020
ATGGGAGATGCAGTAGTATTAGTTGTGGGTCTTGATCAGTCAAAGAAGCCGAAGGTCGTGACAGAGTGGATTTGCTCTTACCTGGAAACCAGCAAAGCCTAGTATCTAACGTGACCAGTGCTGCGAAAGGACCCGTCATATTGGTTATCATGTCAGCAGGGCCTATTGATATATCATTCGCTAAACATAATGACAAGATATCTGGCATTCTTTGGGTAGGATATCCTGGTCAAGCT

Ace file of the UniGene sp_v3.0_unigene56020

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative beta-D-xylosidase n=1 Tax=Glycyrrhiza uralensis RepID=E5RQL3_9FABA	-	-	2.0e-19	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Beta-xylosidase	-	-	2.194e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-glucosidase.	EC:3.2.1.21	-	3.409e-17	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Cyanoamino acid metabolism	00460		3.409e-17	%
Sma3	Starch and sucrose metabolism	00500		3.409e-17	%
Sma3	Phenylpropanoid biosynthesis	00940		3.409e-17	%
Sma3	Biosynthesis of secondary metabolites	01110		3.409e-17	%
Sma3	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	2.969e-07	-

Source	KEGGs	Term	e value	Identity
Sma3	Starch and sucrose metabolism	00500	2.969e-07	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520	2.969e-07	%
Sma3	Metabolic pathways	01100	2.969e-07	%

Source	Gene names
Sma3	ARF; At1g02640; At1g78060; At5g09700; At5g09730; At5g49360; At5g64570; BXL3; BXL4; F17I14_110; F17I14_80; GSVIVT00001462001; GSVIVT00003420001; GSVIVT00008537001; GSVIVT00015256001; GSVIVT00019690001; GSVIVT00019691001; GSVIVT00019692001; GSVIVT0002714900

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	beta-glucosidase activity	GO:0008422	Molecular Function	-
Sma3	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	-
Sma3	alpha-N-arabinofuranosidase activity	GO:0046556	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	xylan catabolic process	GO:0045493	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G64570.1	XYL4, ATBXL4 beta-D-xylosidase 4 chr5:25810227-25813309 REVERSE LENGTH=784	2.0e-23	71%
RefSeq	Arabidopsis thaliana	NP_201262.1	beta-D-xylosidase 4 [Arabidopsis thaliana]	2.0e-23	71%
RefSeq	Populus trichocarpa	XP_002302758.1	predicted protein [Populus trichocarpa]	2.0e-24	67%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABI5

Fln msg: Distance to subject end: 215 aas, atg_distance in limit (1-15): atg_distance = 12, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 67 - 304

Fln protein: SVKEAEGRDRVDLLLPGNQQSLVSNVTSAAKGPVILVIMSAGPIDISFAKHNDKISGILWVGYPGQA

Protein Length: 68

Fln nts: ATGGGAGATGCAGTAGTATTAGTTGTGGGTCTTGATCAGTCAAAGAAGCCGAAGGTCGTGACAGAGTGGATTTGCTCTTACCTGGAAACCAGCAAAGCCTAGTATCTAACGTGACCAGTGCTGCGAAAGGACCCGTCATATTGGTTATCATGTCAGCAGGGCCTATTGATATATCATTCGCTAAACATAATGACAAGATATCTGGCATTCTTTGGGTAGGATATCCTGGTCAAGCT

Fln Alignment:

F51TW9001CY90V___KEAEGRDRVDLLLPGNQQSLVSNVTSAAKGPVILVIMSAGPIDISFAKHNDKISGILWVGYPGQA
D5ABI5_______________QEKEERDRIKLTLPGQQENLVYQVSRAAKRPVVFVILSGGPVDVSFAVNDPQISSIIWAGYPGQA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain