SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene56017

Length: 456 nt

UniGene Fasta

>sp_v3.0_unigene56017
ACATGGAATAATCTCTGTGAGTGGAGTCTTGAGGAATTATTCGCAATGGGAGTAGTAGCGGTAACTCGGTAATGGTGGTGGTGGTGCTAGTCCTGCTACTGGTGAGCGTCAGTGTTAATGCTCAAACTGTGGCTGTGCCAGCGGACTGTGTTGCAGCAAGTATGGATATTGTGGAACCAGCTCTGCTTACTGCGGGGCTGGCTGCAAGAGCGGTCCATGTTCCAGTTCAGGGGAGGATCTCCAAGTGGCGGAGGTGGAAGCGTGGGTACCACCGGATCTACCGACGTCAGAAAGAGAGAACTCGCCGCCTTCTTCGCTAATGTTATGCACGAAACTGGAGGGATGTGCTACATCAATGAGAGAAACCCTCCCATGAACTACTGTAATAGTTCAGCCACGTGGCCGTGTGCGAGTGGTAAGAGCTACCATGGACGTGGCCCTCTCCAGTTGAGCTGG

Ace file of the UniGene sp_v3.0_unigene56017

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Class IV chitinase n=7 Tax=Pinaceae RepID=C3VP99_PSEMZ	-	-	2.0e-27	93%
FL-Next	tr=Class IV chitinase; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii).	-	-	0.0	88%
Sma3	Chromosome chr5 scaffold_72, whole genome shotgun sequence	-	-	2.664e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Chitinase.	EC:3.2.1.14	-	3.792e-18	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Amino sugar and nucleotide sugar metabolism	00520		3.792e-18	%

Source	Gene names
Sma3	At3g12500; At3g54420; CHI-B; Ch4A; Chi4; Chi4C; Chi4D; Cht2; Cht4; GSVIVT00034626001; GSVIVT00034628001; GSVIVT00034631001; GSVIVT00034632001; GSVIVT00034638001; GSVIVT00034646001; GSVIVT00034647001; H0522A01.12; MQC3.32; NtChitIV; OSIGBa0103O01.3; OSIGBa

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chitinase activity	GO:0004568	Molecular Function	-
Sma3	chitin binding	GO:0008061	Molecular Function	-
Sma3	polysaccharide catabolic process	GO:0000272	Biological Process	-
Sma3	chitin catabolic process	GO:0006032	Biological Process	-
Sma3	xenobiotic metabolic process	GO:0006805	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	GO:0009871	Biological Process	-
Sma3	somatic embryogenesis	GO:0010262	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Glycoside hydrolase, family 19, catalytic	IPR000726	-	-
Sma3	Chitin-binding, type 1	IPR001002	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Glycoside hydrolase, family 19	IPR016283	-	-
Sma3	Chitin-binding, type 1, conserved site	IPR018371	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G43570.1	CHI chitinase, putative chr2:18076389-18077435 REVERSE LENGTH=277	1.0e-27	59%
RefSeq	Arabidopsis thaliana	NP_181885.1	chitinase class 4-like protein [Arabidopsis thaliana]	1.0e-27	59%
RefSeq	Populus trichocarpa	XP_002326039.1	predicted protein, partial [Populus trichocarpa]	1.0e-24	55%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C3VP99

Fln msg: Separated hits, possible frame ERROR between 229 and 283, Distance to subject end: 97 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 113 - 277

Fln protein: CSNCGCASGLCCSKYGYCGTSSAYCGAGCKSGPCSSxxxxxxxxxxxxxxxxxxxDVRKRELAAFFANVMHETGGMCYINERNPPMNYCNSSATWPCASGKSYHGRGPLQLSW

Protein Length: 114

Fln nts: ACATGGAATAATCTCTGTGAGTGGAGTCTTGAGGAATTATTCGCAATGGGAGTAGTAGCGGTAACTCGGTAATGGTGGTGGTGGTGCTAGTCCTGCTACTGGTGAGCGTCAGTGTTA_-_ATGCTCAAACTGTGGCTGTGCCAGCGGACTGTGTTGCAGCAAGTATGGATATTGTGGAACCAGCTCTGCTTACTGCGGGGCTGGCTGCAAGAGCGGTCCATGTTCCAGTTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGACGTCAGAAAGAGAGAACTCGCCGCCTTCTTCGCTAATGTTATGCACGAAACTGGAGGGATGTGCTACATCAATGAGAGAAACCCTCCCATGAACTACTGTAATAGTTCAGCCACGTGGCCGTGTGCGAGTGGTAAGAGCTACCATGGACGTGGCCCTCTCCAGTTGAGCTGG

Fln Alignment:

F51TW9001ESQFK___NCGCASGLCCSKYGYCGTSSAYCGAGCKSGPCSSSxxxxxxxxxxxxxxxxxxDVRKRELAAFFANVMHETGGMCYINERNPPMNYCNSSATWPCASGKSYHGRGPLQLSW
C3VP99_______________NCGCASGLCCSKYGYCGTTSAYCGTGCRSGPCSSNxxxxxxxxxxxxxxxxxxDVKKRELAAFFANVMHETGGLCYINERNPPMIYCNSSSTWPCASGKSYHGRGPLQLSW

SSRs (tot: 1)

Start position	End position	Sequence	Length
73	86	TGG TGG TGG TGG TG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain