SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55991

Length: 230 nt

UniGene Fasta

>sp_v3.0_unigene55991
TGCCTTCACCCAGGTGATGTACGAGTCTTGTCTGCTGTAAACACATCCAAACTTCATCACATGGTTGACTGCGTAGTTTTCCCACAGCAAGGTGAAAGGTAAGTAGATAATGATTTTAGTTCATTATTTAAAACTAGTTTTCCATCTGATAGAAGTAAAACCATTTAATCGACCTAAGTTAAATAAATTGTTATTATTGGCCTGTGTTTTATTCAGTTAAATTCTGAGTG

Ace file of the UniGene sp_v3.0_unigene55991

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA-directed RNA polymerase n=6 Tax=Solanum RepID=Q9ZR58_SOLLC	-	-	6.0e-09	70%
FL-Next	sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice).	-	-	0.0	65%
Sma3	RNA-directed RNA polymerase, putative	-	-	1.017e-17	-

Source	Gene names
Sma3	At1g14790; GSVIVT00030600001; GSVIVT00030602001; POPTRDRAFT_564678; RDR901; RdRP; SDM1_25t00006; SDM1_32t00003; SDM1_32t00007; SDM1_34t00002; SDM1_42t00020; SDM1_42t00022; STB1_54t00003; VITISV_039922; VITISV_040047;

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA-directed RNA polymerase activity	GO:0003968	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	RNA-dependent RNA polymerase, eukaryotic-type	IPR007855	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G14790.1	RDR1, ATRDRP1 RNA-dependent RNA polymerase 1 chr1:5094317-5097817 REVERSE LENGTH=1107	2.0e-11	70%
RefSeq	Arabidopsis thaliana	NP_172932.1	RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]	2.0e-11	70%
RefSeq	Populus trichocarpa	XP_002311535.1	rna-dependent RNA polymerase [Populus trichocarpa]	1.0e-12	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8LHH9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 297 aas, your sequence is shorter than subject: 34 - 1218

Fln protein: CLHPGDVRVLSAVNTSKLHHMVDCVVFPQQGER*

Protein Length: 35

Fln nts: TGCCTTCACCCAGGTGATGTACGAGTCTTGTCTGCTGTAAACACATCCAAACTTCATCACATGGTTGACTGCGTAGTTTTCCCACAGCAAGGTGAAAGGTAAGTAGATAATGATTTTAGTTCATTATTTAAAACTAGTTTTCCATCTGATAGAAGTAAAACCATTTAATCGACCTAAGTTAAATAAATTGTTATTATTGGCCTGTGTTTTATTCAGTTAAATTCTGAGTG

Fln Alignment:

F5X2MQL01AGOCI___CLHPGDVRVLSAVNTSKLHHMVDCVVFPQQGER*VDNDFS
Q8LHH9_______________CLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHANEAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain