SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55837

Length: 214 nt

UniGene Fasta

>sp_v3.0_unigene55837
GACAACATTCAGGGCTCATGAAGGGCATTATGTATTCAAGGTCATGCCATTTGGGATTAACAAATGCACCAGTCACCTTCCAAGCAACCATGAATGAGTTCTTTCACCCTTATCTACGGAAGTTTGTATTAGTTCTCTTCAATGATATTCTAGTCTACAGTAAGACCTGGAAGGAACATCTCAAACATCTAGAAGAAGTGTTGTCTGTTTTAGG

Ace file of the UniGene sp_v3.0_unigene55837

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to polyprotein n=1 Tax=Vitis vinifera RepID=UPI0001983558	-	-	1.0e-17	67%
FL-Next	sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion.	-	-	0.0	46%

Source	Gene names
Sma3	At2g05610; F23H6.1; LOC_Os03g30350; LOC_Os10g28310; LOC_Os10g40890; LOC_Os11g38750; LOC_Os11g45000; LOC_Os12g24050; MtrDRAFT_AC150244g37v2; OSIGBa0118P15.5; OSJNBa0010C11.17; OSJNBa0087O24.13; OSJNBb0056B16.5; OSJNBb0059G13.28; Os06g0493000; Os08g0164800;

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Intron-encoded nuclease 2	IPR003611	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P31843

Fln msg: STOP codon was not found. Distance to subject end: 5 aas, your sequence is shorter than subject: 70 - 142

Fln protein: QHSGLMKGIMYSRSCHLGLTNAPVTFQATMNEFFHPYLRKFVLVLFNDILVYSKTWKEHLKHLEEVLSVL

Protein Length: 71

Fln nts: GACAACATTCAGGGCTCATGAAGGGCATTATGTATTCAAGGTCATGCCATTTGGGATTAACAAATGCACCAGTCACCTTCCAAGCAACCATGAATGAGTTCTTTCACCCTTATCTACGGAAGTTTGTATTAGTTCTCTTCAATGATATTCTAGTCTACAGTAAGACCTGGAAGGAACATCTCAAACATCTAGAAGAAGTGTTGTCTGTTTTAGG

Fln Alignment:

F5V9AAZ02JN26B___GLTNAPVTFQATMNEFFHPYLRKFVLVLFNDILV---YSKTWKEHLKHLEEV
P31843_______________GLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEHIKHLRVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain