SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55828

Length: 108 nt

UniGene Fasta

>sp_v3.0_unigene55828
ATGGGAATAAAGTGGAACTTCACTAAGTTTCTGGTGGACAAAGATGGAAATGTTGTTGAACGATATGCCACCCATACGTCTCCATTGAGTATACGAAGAAAGATGTAC

Ace file of the UniGene sp_v3.0_unigene55828

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutathione peroxidase (Fragment) n=6 Tax=Picea sitchensis RepID=E0Z6F2_PICSI	-	-	2.0e-08	82%
FL-Next	sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Glutathione peroxidase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipid-hydroperoxide glutathione peroxidase.	EC:1.11.1.12	-	4.135e-17	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		4.135e-17	%

Source	Gene names
Sma3	At4g11600; BarPHGPX; CSA; GP; GPX; GPX1; GPX6; GPXMC1; GSVIVT00000409001; GSVIVT00001920001; LOC_Os11g18170; Os11g0284900; OsI_35816; OsJ_33645; POPTRDRAFT_709364; PtrcGpx3_1; RCOM_1686470; T5C23.30; VITISV_034775; gpx; gpx1; gsh-px1;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	glutathione peroxidase activity	GO:0004602	Molecular Function	-
Sma3	phospholipid-hydroperoxide glutathione peroxidase activity	GO:0047066	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glutathione peroxidase	IPR000889	-	0.0	-
Sma3		IPR012335	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G11600.1	ATGPX6, PHGPX, LSC803, GPX6 glutathione peroxidase 6 chr4:7010021-7011330 REVERSE LENGTH=232	8.0e-12	78%
RefSeq	Arabidopsis thaliana	NP_192897.2	glutathione peroxidase [Arabidopsis thaliana]	1.0e-11	78%
RefSeq	Populus trichocarpa	XP_002299536.1	glutathione peroxidase [Populus trichocarpa]	5.0e-11	77%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKE6

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 36 - 170

Fln protein: MGIKWNFTKFLVDKDGNVVERYATHTSPLSIRRKMY

Protein Length: 37

Fln nts: ATGGGAATAAAGTGGAACTTCACTAAGTTTCTGGTGGACAAAGATGGAAATGTTGTTGAACGATATGCCACCCATACGTCTCCATTGAGTATACGAAGAAAGATGTAC

Fln Alignment:

F5V9AAZ01BCZCK___GIKWNFTKFLVDKDGNVVERYATHTSPLSIRR
A9NKE6_______________GIKWNFTKFLVDKDGNVVERYAPTTSPLSIEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain