SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55812

Length: 275 nt

UniGene Fasta

>sp_v3.0_unigene55812
GTATGACGAGGTCAACCATGGTTGCGTGCTGGTGATGAGACTTTCATCTGTTCTCGTTGTCCGCTTCTCTGCATTGCGTTGTTTTCTACTGATTCGAATTTTCACTCCTATAGTCCAGCTCTGTCCTCCTCCTTTTCTGACTCGGCGGCCCGTGTGACCACGACCTTAACCGATAACAGAGCCAGCGAGCATTTTTCATATTGTTGCTGTATATGCCTGGGTGGATCCCACGACTGGTTATTGCCAAGGTATGAGTGATTTGTTATCTCCATTCA

Ace file of the UniGene sp_v3.0_unigene55812

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00566, TBC, TBC domain	-	-	1.0e-05	37%
FL-Next	tr=Putative GTPase-activating protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	80%

Source	Gene names
Sma3	At2g43490; At3g59570/T16L24_120; GSVIVT00034607001; OSJNOa264G09.1; OsI_00002; OsJ_00001; P0672D08.1; PHYPADRAFT_151822; POPTRDRAFT_802561; POPTRDRAFT_810296; RCOM_0414400; T16L24.120; VITISV_034214;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	Rab GTPase activator activity	GO:0005097	Molecular Function	-
Sma3	regulation of Rab GTPase activity	GO:0032313	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Rab-GTPase-TBC domain	IPR000195	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q655M0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 241 aas, your sequence is shorter than subject: 91 - 684

Fln protein: YDEVNHGCVLVMRLSSVLVVRFSALRCFLLIRIFTPIVQLCPPPFLTRRPV*PRP*PITEPASIFHIVAVYAWVDPTTGYCQGMSDLLSPF

Protein Length: 92

Fln nts: GTATGACGAGGTCAACCATGGTTGCGTGCTGGTGATGAGACTTTCATCTGTTCTCGTTGTCCGCTTCTCTGCATTGCGTTGTTTTCTACTGATTCGAATTTTCACTCCTATAGTCCAGCTCTGTCCTCCTCCTTTTCTGACTCGGCGGCCCGTGTGACCACGACCTTAACCGATAACAGAGCCAGCGAGCATTTTTCATATTGTTGCTGTATATGCCTGGGTGGATCCCACGACTGGTTATTGCCAAGGTATGAGTGATTTGTTATCTCCATTCA

Fln Alignment:

F585NNT02GZRQ6___ASIFHIVAVYAWVDPTTGYCQGMSDLLSPF
Q655M0_______________ARMSDILAVYAWVDPSTGYCQGMSDLLSPF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain