SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55792

Length: 293 nt

UniGene Fasta

>sp_v3.0_unigene55792
ATGGGGCTCTTCATCTTGTGCGAGTCTCTCTGCTCTCTACGCCGCTGCGAAGCTGTTCTGTGGTGCTTCTGATTCTCCAGACTCAGGCAGCCGTGTTTGTAAGAGAATTTAGTTCATCATGGGAAAGGAGAAAACCCATATCAACATTGTGGTTATTGGCCATGTCGACTCCGGCAAGTCAACAACCACTGGGCATTTGATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAACGTTTTAAGATGATTCCAACCAAACCCATGGTTGTCGAAACTTTTGCAGAGTATC

Ace file of the UniGene sp_v3.0_unigene55792

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative elongation factor 1-alpha (Fragment) n=1 Tax=Prunus dulcis RepID=A7Y7K1_PRUDU	-	-	8.0e-17	93%
FL-Next	sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	Elongation factor 1-alpha	-	-	0.0	-

Source	Gene names
Sma3	A1; A2; A3; A4; AT1G07930; At1g07920; At1g07920/T6D22.2; At1g07930; At1g07940; At5g60390; BLT63; EF-1; EF-1-alpha; EF-1-alpha1; EF-1alpha; EF1; EF1-A; EF1-a1; EF1-alpha; EF1A; EF1A1; EF1A2; EF1A3; EF1A4; EF1A5; EF1A6; EF1A7; EF1A8; EF1A9; EF1a; GSVIVT0002

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EF1A, eukaryotic/archaeal	IPR004539	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G60390.1	GTP binding Elongation factor Tu family protein chr5:24289226-24290675 FORWARD LENGTH=449	1.0e-20	95%
RefSeq	Arabidopsis thaliana	NP_001077483.1	Elongation factor 1-alpha [Arabidopsis thaliana]	6.0e-21	95%
RefSeq	Populus trichocarpa	XP_002337967.1	predicted protein, partial [Populus trichocarpa]	1.0e-21	95%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTP0

Fln msg: Distance to subject end: 389 aas, your sequence is shorter than subject: 58 - 447

Fln protein: MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFKMIPTKPMVVETFAEY

Protein Length: 59

Fln nts: ATGGGGCTCTTCATCTTGTGCGAGTCTCTCTGCTCTCTACGCCGCTGCGAAGCTGTTCTGTGGTGCTTCTGATTCTCCAGACTCAGGCAGCCGTGTTTGTAAGAGAATTTAGTTCATC_-_ATGGGAAAGGAGAAAACCCATATCAACATTGTGGTTATTGGCCATGTCGACTCCGGCAAGTCAACAACCACTGGGCATTTGATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAACGTTTTAAGATGATTCCAACCAAACCCATGGTTGTCGAAACTTTTGCAGAGTATC

Fln Alignment:

F585NNT02I0JN6___MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFK
C0PTP0_______________MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain