SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55780

Length: 400 nt

UniGene Fasta

>sp_v3.0_unigene55780
ATGGGCACAGAGACATGAAGCCTGATAATTTTCTTATGGGGCTTGGTCAGAAAGCAAATCAGGTCTACGTGATTGATTTCGGTCTTGCAAAGAAGTTCCAAGACCCAGTGACCCTACGTCATATTCACTTCAGGTCTTGTTTTGTGATTTAATTGCTGTTTTTCCTTGATTTGAAGAGATGTGCATAGTTGCAAAGTAGTGGATCATGTGCATTTTAAAAGCGTGAGGAAACTACAAGATAATAGAGCCTGTTGATTGGAAGAGTATATGGTCAAAAAAAAGTTCTTCATGTAGATAGAAGCGTACATTTCCTGTTTTTAAATACTTTAATCTTGGATGCAAGAGTGTGGGTGAATTTAAGAAAAGTATATGGCAGTAGATAAGTTTCTCATTGTGAAGT

Ace file of the UniGene sp_v3.0_unigene55780

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase ADK1-like protein [Arabidopsis thaliana]	-	-	3.0e-12	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Casein kinase, putative	-	-	1.401e-21	-

Source	Gene names
Sma3	ADK1; AT4g14340; AT4g28540; AT4g28860; AT4g28880; At1g03930; At1g04440; At1g72710; At1g72710/F28P22.10; At2g19470; At3g23340; At4g14340; At4g26100; At4g28540; At4g28860; At4g28880; At4g28880/F16A16_10; At5g43320; At5g44100; At5g57015; B1114B07.27-1; B1114

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plasmodesma	GO:0009506	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to brassinosteroid stimulus	GO:0009741	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	auxin metabolic process	GO:0009850	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Domain of unknown function DUF71, ATP-binding domain	IPR002761	-	-
Sma3	YjgF/Yer057p/UK114 family	IPR006175	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Endoribonuclease L-PSP/chorismate mutase-like	IPR013813	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G28540.1	CKL6, PAPK1 casein kinase I-like 6 chr4:14107284-14110511 FORWARD LENGTH=479	6.0e-16	76%
RefSeq	Arabidopsis thaliana	NP_567812.1	casein kinase I-like 6 [Arabidopsis thaliana]	8.0e-16	76%
RefSeq	Populus trichocarpa	XP_002324433.1	predicted protein [Populus trichocarpa]	5.0e-16	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUC1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 224 aas, your sequence is shorter than subject: 50 - 481

Fln protein: GHRDMKPDNFLMGLGQKANQVYVIDFGLAKKFQDPVTLRHIHFRSCFVI*

Protein Length: 51

Fln nts: ATGGGCACAGAGACATGAAGCCTGATAATTTTCTTATGGGGCTTGGTCAGAAAGCAAATCAGGTCTACGTGATTGATTTCGGTCTTGCAAAGAAGTTCCAAGACCCAGTGACCCTACGTCATATTCACTTCAGGTCTTGTTTTGTGATTTAATTGCTGTTTTTCCTTGATTTGAAGAGATGTGCATAGTTGCAAAGTAGTGGATCATGTGCATTTTAAAAGCGTGAGGAAACTACAAGATAATAGAGCCTGTTGATTGGAAGAGTATATGGTCAAAAAAAAGTTCTTCATGTAGATAGAAGCGTACATTTCCTGTTTTTAAATACTTTAATCTTGGATGCAAGAGTGTGGGTGAATTTAAGAAAAGTATATGGCAGTAGATAAGTTTCTCATTGTGAAGT

Fln Alignment:

F585NNT02H6ACE___HRDMKPDNFLMGLGQKANQVYVIDFGLAKKFQDPVTLRHIHFR
A9NUC1_______________HRDVKPDNFLMGLGRRANQVYVIDFGLAKKYRDPVSHQHIPYR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain