SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55769

Length: 262 nt

UniGene Fasta

>sp_v3.0_unigene55769
TTGTTGCACTTTCATGGTGTGCAGAAGCTATTGAGTATGCTAAATACAAGGACCCATCTCAGCCCATCACCGCACGTGTGGAGGACTTGCTGGCGAGAATGACATTGGAAGAGAAGATCGGACAGATGACCCAGATTGAAAGAACAGTCGCCACCGCAGACGTTATGAAAAATTATTACATTGGAAGTGTGCTGAGCGGAGGTGGTAGCGCTCCTGCACCCAAGGCATCCTCCAGCAACATGGATGAACATGGTAGATGAGC

Ace file of the UniGene sp_v3.0_unigene55769

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-D-glucan exohydrolase n=1 Tax=Nicotiana tabacum RepID=O82151_TOBAC	-	-	3.0e-16	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Beta-D-glucan exohydrolase-like protein	-	-	2.243e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-glucosidase.	EC:3.2.1.21	-	2.296e-12	-

Source	KEGGs	Term	e value	Identity
Sma3	Cyanoamino acid metabolism	00460	2.296e-12	%
Sma3	Starch and sucrose metabolism	00500	2.296e-12	%
Sma3	Phenylpropanoid biosynthesis	00940	2.296e-12	%
Sma3	Biosynthesis of secondary metabolites	01110	2.296e-12	%

Source	Gene names
Sma3	At3g47000; At3g47000/F13I12.50; At3g47010; At3g47040; At3g47050; At5g04885; At5g20940; At5g20950; B1122D01.6; ExoI; F13I12.100; F13I12.50; F13I12.60; F13I12.90; GSVIVT00002637001; GSVIVT00017475001; GSVIVT00017476001; GSVIVT00017481001; GSVIVT00024156001;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	glucan exo-1,3-beta-glucosidase activity	GO:0004338	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	beta-glucosidase activity	GO:0008422	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G20950.1	Glycosyl hydrolase family protein chr5:7107609-7110775 REVERSE LENGTH=624	2.0e-18	72%
RefSeq	Arabidopsis thaliana	NP_197595.2	Glycosyl hydrolase family protein [Arabidopsis thaliana]	3.0e-18	72%
RefSeq	Populus trichocarpa	XP_002313632.1	predicted protein [Populus trichocarpa]	4.0e-21	77%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUD1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 529 aas, atg_distance in limit (1-15): atg_distance = 16, W2: There is no M at the beginning, your sequence is shorter than subject: 86 - 631

Fln protein: VALSWCAEAIEYAKYKDPSQPITARVEDLLARMTLEEKIGQMTQIERTVATADVMKNYYIGSVLSGGGSAPAPKASSSNMDEHGR*

Protein Length: 87

Fln nts: TTGTTGCACTTTCATGGTGTGCAGAAGCTATTGAGTATGCTAAATACAAGGACCCATCTCAGCCCATCACCGCACGTGTGGAGGACTTGCTGGCGAGAATGACATTGGAAGAGAAGATCGGACAGATGACCCAGATTGAAAGAACAGTCGCCACCGCAGACGTTATGAAAAATTATTACATTGGAAGTGTGCTGAGCGGAGGTGGTAGCGCTCCTGCACCCAAGGCATCCTCCAGCAACATGGATGAACATGGTAGATGAGC

Fln Alignment:

F585NNT02FU53P___VALSWCAEAIEYAKYKDPSQPITARVEDLLARMTLEEKIGQMTQIERTVATADVMKNYYIGSVL
A9NUD1_______________VVLCKCAGAIGYAKYKDPSQPIIARVEDLLARMTVEEKIGQMTQIERSDATADVMKKYYIGSVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain