SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55743

Length: 153 nt

UniGene Fasta

>sp_v3.0_unigene55743
ATGGGTACACCTAGAAGAAGGTGCCCTAATTTGCCCTGAAACTGGTAGACGATTTCCAGTAAACAAGGGTATTCCAAATATGTTGCTTCATGAAGATGAAGTGTAAGAATATAAATTCGTATATTCTTTTGGATAGTTTAAGGAAGTCATATA

Ace file of the UniGene sp_v3.0_unigene55743

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Methyltransferase-associated protein	-	-	6.299e-10	-

Source	Gene names
Sma3	At1g22270; At1g78190; CHLREDRAFT_128082; MICPUCDRAFT_70810; MICPUN_113392; OSTLU_40420; PHYPADRAFT_126118; POPTRDRAFT_1071714; POPTRDRAFT_209501; RCOM_0489740; RCOM_0771320; T11I11.13; TRM112;

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 13, N-terminal	IPR004193	-	-
Sma3	Uncharacterised protein family UPF0434/Trm112	IPR005651	-	-
Sma3	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G22270.1	Trm112p-like protein chr1:7865548-7865922 FORWARD LENGTH=124	4.0e-17	90%
RefSeq	Arabidopsis thaliana	NP_564163.1	Trm1.2-like protein [Arabidopsis thaliana]	6.0e-17	90%
RefSeq	Populus trichocarpa	XP_002302295.1	predicted protein [Populus trichocarpa]	5.0e-17	90%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NT36

Fln msg: your sequence is shorter than subject: 35 - 122

Fln protein: WVHLEEGALICPETGRRFPVNKGIPNMLLHEDEV*

Protein Length: 36

Fln nts: ATGGGTACACCTAGAAGAAGGTGCCCTAATTTGCCCTGAAACTGGTAGACGATTTCCAGTAAACAAGGGTATTCCAAATATGTTGCTTCATGAAGATGAAGTGTAA___GAATATAAATTCGTATATTCTTTTGGATAGTTTAAGGAAGTCATATA

Fln Alignment:

F5V9AAZ01A20JS___VHLEEGALICPETGRRFPVNKGIPNMLLHEDEV
A9NT36_______________LHLEEGALICPETGRRFPVNKGIPNMLLHEDEV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain