SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55626

Length: 236 nt

UniGene Fasta

>sp_v3.0_unigene55626
GCTACCCTTCTTGCGCTTCCTCAGGACGTCGTCAAGGCCAACTCCGATGGCCAGGTCAAGCTGTTCGGAAAGTGGGAGACCAACGACATTGAGGTCAAGGACATTTCCTTGACTGACTACATCCAGGTCAGGCATGCTGTCTACGTTCCTCACACCGCTGGGCGATACGCCAAGAAGCAGTTCGCCAAGGGACGAATGCCCATTGTCGAGGGGCTCGTCAACGCCCTCATGATGAA

Ace file of the UniGene sp_v3.0_unigene55626

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40s ribosomal protein s5-1 [Cryptococcus neoformans var. neoformans JEC21] ref\|XP_772651.1\| hypothetical protein CNBK0250 [Cryptococcus neoformans var. neoformans B-3501A] gb\|EAL18004.1\| hypothetical protein CNBK0250 [Cryptococcus neoformans var. neoforma	-	-	2.0e-26	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	40S ribosomal protein S5	-	-	5.475e-14	-

Source	Gene names
Sma3	At2g37270; At3g11940; CHLREDRAFT_191776; F26K24.23; F3G5.6; GSVIVT00025458001; MEC18.4; MICPUCDRAFT_48485; MICPUN_90425; OSTLU_12674; Ot07g00060; PHYPADRAFT_106946; PHYPADRAFT_187157; PHYPADRAFT_200012; PHYPADRAFT_215387; PHYPADRAFT_66468; POPTRDRAFT_2560

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S7	IPR000235	-	0.0	-
Sma3	Ribosomal protein S7, eukaryotic/archaeal	IPR005716	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G37270.1	ATRPS5B, RPS5B ribosomal protein 5B chr2:15647883-15649042 REVERSE LENGTH=207	1.0e-18	57%
RefSeq	Arabidopsis thaliana	NP_001031502.1	40S ribosomal protein S5-1 [Arabidopsis thaliana]	1.0e-18	57%
RefSeq	Populus trichocarpa	XP_002322748.1	predicted protein, partial [Populus trichocarpa]	2.0e-19	61%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRE6

Fln msg: Distance to subject end: 125 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 78 - 198

Fln protein: ATLLALPQDVVKANSDGQVKLFGKWETNDIEVKDISLTDYIQVRHAVYVPHTAGRYAKKQFAKGRMPIVEGLVNALMM

Protein Length: 79

Fln nts: GCTACCCTTCTTGCGCTTCCTCAGGACGTCGTCAAGGCCAACTCCGATGGCCAGGTCAAGCTGTTCGGAAAGTGGGAGACCAACGACATTGAGGTCAAGGACATTTCCTTGACTGACTACATCCAGGTCAGGCATGCTGTCTACGTTCCTCACACCGCTGGGCGATACGCCAAGAAGCAGTTCGCCAAGGGACGAATGCCCATTGTCGAGGGGCTCGTCAACGCCCTCATGATGAA

Fln Alignment:

F585NNT02IWG41___QVKLFGKWETNDIEVKDISLTDYIQV---RHAVYVPHTAGRYAKKQFAKGRMPIVEGLVNALMM
A9NRE6_______________EVKLFNRWTFEDVEVNDLSLADYIAVQSQKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMM

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain