SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55587

Length: 166 nt

UniGene Fasta

>sp_v3.0_unigene55587
ATTTTTGGGGGGTTTTTCAAGACCATCGCCACCAGCTCCGTCCACTACAACGGCGTCCTCGAGTACGACGCCCACAGCCTCTATGGCTTATCGCAGGCCATCGCCACGCACAAGGCNCTCCAGGGAATCGTGTTGAACAAGCGCCCATTCGTGCTCACGCGCTCCA

Ace file of the UniGene sp_v3.0_unigene55587

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative alpha-xylosidase n=1 Tax=Pinus pinaster RepID=Q8VWV9_PINPS	-	-	5.0e-17	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Putative alpha-glucosidase	-	-	7.196e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:3.2.1.2-	-	3.261e-07	-

Source	Gene names
Sma3	Agl2; At1g68560; F16L2_150; F24J5.20; GSVIVT00030331001; Os01g0130400; OsI_00249; OsJ_00241; P0504H10.9; PHYPADRAFT_108417; PHYPADRAFT_203221; PHYPADRAFT_205099; POPTRDRAFT_1090916; POPTRDRAFT_564524; PpGLU; RCOM_0030540; VITISV_025206; XYL1; mal2;

Source	GOs	Term	Type	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	alpha-glucosidase activity	GO:0004558	Molecular Function	-
Sma3	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	-
Sma3	alpha-N-arabinofuranosidase activity	GO:0046556	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	xylan catabolic process	GO:0045493	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 31	IPR000322	-	0.0	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G45940.1	Glycosyl hydrolases family 31 protein chr3:16886226-16889171 REVERSE LENGTH=868	2.0e-16	72%
RefSeq	Arabidopsis thaliana	NP_190180.1	alpha-glucosidase [Arabidopsis thaliana]	2.0e-16	72%
RefSeq	Populus trichocarpa	XP_002311455.1	predicted protein [Populus trichocarpa]	3.0e-20	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKI6

Fln msg: Distance to subject end: 366 aas, your sequence is shorter than subject: 55 - 908

Fln protein: IFGGFFKTIATSSVHYNGVLEYDAHSLYGLSQAIATHKALQGIVLNKRPFVLTRS

Protein Length: 56

Fln nts: ATTTTTGGGGGGTTTTTCAAGACCATCGCCACCAGCTCCGTCCACTACAACGGCGTCCTCGAGTACGACGCCCACAGCCTCTATGGCTTATCGCAGGCCATCGCCACGCACAAGGCaCTCCAGGGAATCGTGTTGAACAAGCGCCCATTCGTGCTCACGCGCTCCA

Fln Alignment:

F585NNT02I1Q7K___FKTIATSSVHYNGVLEYDAHSLYGLSQAIATHKALQGIVLNKRPFVLTRS
B8LKI6_______________FKTIATSSVHYNGILEYDAHSLYGFSQAIATHKALQNL-LNKRPFVLTRS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain