SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55564

Length: 479 nt

UniGene Fasta

>sp_v3.0_unigene55564
TGTTTCAAGGGGACAATGTTTATGAAATCTGTTGATGCTTCTGCACATATCAAGGATGTAAAATTATTATGTGATTTGTTGAATGTGTTTATTTTGGAGGTATGTGCAGAACATGTTGTCCAAGTCATAACGGACAATGCTGCAAATTATGTTGTTGCTAACAAGATGCTTATGGAGAGGCATCCTACTTTATTTTGGACATCTTGTGTTGCACTGTTAAATTGGCAACTAGAGACAAACTCCATGTGGGTCATCTTATTTATGGCAGCTGATATTTTTCTTTGGATACCTCTCATCGAGAGGTGTAAGATTTGATCTAAAGATCATCTAATTTCGATAAGTATTCATGGAGATATGAAGTTATTTGTGTTATAAGACAATTTGTCAAGGTCAGCCAGCAACCAAATAAACCCCACAAGTGCTCAATGTTTTAGCATAAAAGGAGATGACTTGAGAGTCATTTCTCACACACACACTTC

Ace file of the UniGene sp_v3.0_unigene55564

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF659 domain containing protein	-	-	9.0e-24	56%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	53%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G31412.1	hAT transposon superfamily protein chr5:11541463-11543768 REVERSE LENGTH=433	2.0e-11	45%
RefSeq	Arabidopsis thaliana	NP_680273.1	hAT family dimerization domain-containing protein [Arabidopsis thaliana]	3.0e-11	45%
RefSeq	Populus trichocarpa	XP_002329897.1	predicted protein, partial [Populus trichocarpa]	6.0e-17	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5C171

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 279 aas, your sequence is shorter than subject: 105 - 926

Fln protein: CFKGTMFMKSVDASAHIKDVKLLCDLLNVFILEVCAEHVVQVITDNAANYVVANKMLMERHPTLFWTSCVALLNWQLETNSMWVILFMAADIFLWIPLIERCKI*

Protein Length: 106

Fln nts: TGTTTCAAGGGGACAATGTTTATGAAATCTGTTGATGCTTCTGCACATATCAAGGATGTAAAATTATTATGTGATTTGTTGAATGTGTTTATTTTGGAGGTATGTGCAGAACATGTTGTCCAAGTCATAACGGACAATGCTGCAAATTATGTTGTTGCTAACAAGATGCTTATGGAGAGGCATCCTACTTTATTTTGGACATCTTGTGTTGCACTGTTAAATTGGCAACTAGAGACAAACTCCATGTGGGTCATCTTATTTATGGCAGCTGATATTTTTCTTTGGATACCTCTCATCGAGAGGTGTAAGATTTGATCTAAAGATCATCTAATTTCGATAAGTATTCATGGAGATATGAAGTTATTTGTGTTATAAGACAATTTGTCAAGGTCAGCCAGCAACCAAATAAACCCCACAAGTGCTCAATGTTTTAGCATAAAAGGAGATGACTTGAGAGTCATTTCTCACACACACACTTC

Fln Alignment:

F585NNT02JUFCN___CFKGTMFMKSVDASAHIKDVKLLCDLLNVFILEVCAEHVVQVITDNAANYVVANKMLMERHPTLFWTSCVA
A5C171_______________CPKGTLFLKSVDISGHADDAHYLFELLESVVLEVGLENVVQVITDSAASYVYAGRLLMAKYTTLFWSPCAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain