SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55553

Length: 427 nt

UniGene Fasta

>sp_v3.0_unigene55553
CACATGGGGGCACTGAGGCCAACGAAGCAGCCATCAAGTTTTCCAGGAAGCATGCTCGGCTAGCAGCTGGCGTGGACCCATATGACCCGAAGGCAGAGGCTCCCCACGAGATGGTCAGCTTCACCGGCAAGCTCTTTGGCTACCAGAACTTCGATGTGGAGCCTGACATCCTCACCCTGGCTAAGCCCCTTGCAGGTGGGCTGCCCATTGGAGCAGTGCTGGTGAAGCAGCATGTGGCAGACAGCATGAAGCCGGGCGACCACGGATCCACGTTTGCCGGCAACCCCCTCGACATCATTTCAGAGCCTGCCTTCCTCCAGAGTGTGCTTGACAAGGGAGAGAGGCTGCGGTCAGGGCTTGCAGAGGCCCTCAAGGGCAACGAGCATGTCAAGGAGATCAGGGGCTTGGGACTCATCACCGGCATCCA

Ace file of the UniGene sp_v3.0_unigene55553

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acetylornithine aminotransferase n=1 Tax=Chlamydomonas reinhardtii RepID=A8J933_CHLRE	-	-	2.0e-34	66%
FL-Next	tr=Ornithine aminotransferase; Pinus sylvestris (Scots pine).	-	-	0.0	37%
Sma3	Acetylornithine aminotransferase, putative	-	-	2.807e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acetylornithine transaminase.	EC:2.6.1.11	-	1.796e-11	-

Source	KEGGs	Term	e value	Identity
Sma3	Lysine biosynthesis	00300	1.796e-11	%
Sma3	Arginine and proline metabolism	00330	1.796e-11	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	1.796e-11	%
Sma3	Metabolic pathways	01100	1.796e-11	%
Sma3	Biosynthesis of secondary metabolites	01110	1.796e-11	%

Source	Gene names
Sma3	AG118; ARG9; At1g80600; At1g80600/T21F11.7; CHLREDRAFT_139007; GSVIVT00033255001; GSVIVT00035727001; MICPUCDRAFT_59169; MICPUN_109320; OSJNBa0056I11.12; OSTLU_19153; Os05g0129100; Os07g0461900; OsI_18305; OsI_25895; Ot14g03520; P0038F09.37; PHYPADRAFT_112

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	4-aminobutyrate transaminase activity	GO:0003867	Molecular Function	-
Sma3	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity	GO:0003992	Molecular Function	-
Sma3	transaminase activity	GO:0008483	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	arginine metabolic process	GO:0006525	Biological Process	-
Sma3	arginine biosynthetic process	GO:0006526	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Acetylornithine/Succinylornithine aminotransferase	IPR004636	-	-
Sma3	Aminotransferase class-III	IPR005814	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G80600.1	WIN1 HOPW1-1-interacting 1 chr1:30298675-30300513 REVERSE LENGTH=457	6.0e-32	55%
RefSeq	Arabidopsis thaliana	NP_178175.1	acetylornithine aminotransferase [Arabidopsis thaliana]	8.0e-32	55%
RefSeq	Populus trichocarpa	XP_002334751.1	predicted protein, partial [Populus trichocarpa]	7.0e-32	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q1RPP3

Fln msg: Distance to subject end: 87 aas, your sequence is shorter than subject: 141 - 468

Fln protein: HGGTEANEAAIKFSRKHARLAAGVDPYDPKAEAPHEMVSFTGKLFGYQNFDVEPDILTLAKPLAGGLPIGAVLVKQHVADSMKPGDHGSTFAGNPLDIISEPAFLQSVLDKGERLRSGLAEALKGNEHVKEIRGLGLITGI

Protein Length: 142

Fln nts: CACATGGGGGCACTGAGGCCAACGAAGCAGCCATCAAGTTTTCCAGGAAGCATGCTCGGCTAGCAGCTGGCGTGGACCCATATGACCCGAAGGCAGAGGCTCCCCACGAGATGGTCAGCTTCACCGGCAAGCTCTTTGGCTACCAGAACTTCGATGTGGAGCCTGACATCCTCACCCTGGCTAAGCCCCTTGCAGGTGGGCTGCCCATTGGAGCAGTGCTGGTGAAGCAGCATGTGGCAGACAGCATGAAGCCGGGCGACCACGGATCCACGTTTGCCGGCAACCCCCTCGACATCATTTCAGAGCCTGCCTTCCTCCAGAGTGTGCTTGACAAGGGAGAGAGGCTGCGGTCAGGGCTTGCAGAGGCCCTCAAGGGCAACGAGCATGTCAAGGAGATCAGGGGCTTGGGACTCATCACCGGCATCCA

Fln Alignment:

F585NNT02F89BD___TGKLFGYQNFDVEPDILTLAKPLAGG-LPIGAVLVKQHVADSMKPGDHGSTFAGNP---------LDIISEPAFLQSVLDKGERLRSGLAEALKGNEH-VKEIRGLGLITGI
Q1RPP3_______________TGKLLACEWESVRPDVVILGKALGGGVLPVSAVLADKDIMLCFKPGEHGSTFGGNPLASAVAIAALEIVEEEKLAERAAEMGQVFRSQFLDIQKAYPHIIKEVRGQGLLNAV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain