SustainPineDB

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Assembly info
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SSRs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55547

Length: 189 nt

UniGene Fasta

>sp_v3.0_unigene55547
GGAACCCTACAACGCTACGCTCTCTGTTCATCAGCTGGTGGAAAATGCAGGATGAGTGGTATTGGGTTCTCGACAATTGGAGGCCCTGTACGACATTTGTTTCAGGACACTCAAGCTCACTACTCCTAGCTTCGGAGATTTGAACCATTTTAATCTCTGCGACTATGAGTGGAGTGACAGTGCTGCCTC

Ace file of the UniGene sp_v3.0_unigene55547

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tubulin beta chain, putative n=2 Tax=Eukaryota RepID=B9S382_RICCO	-	-	3.0e-13	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Beta tubulin	-	-	9.885e-11	-

Source	Gene names
Sma3	At1g20010; At2g29550; At5g12250; At5g12250/MXC9_21; At5g23860; BTub-1; F16P2.7; GSVIVT00000394001; GSVIVT00009147001; GSVIVT00014415001; GSVIVT00017326001; GSVIVT00017820001; GSVIVT00021443001; GSVIVT00023281001; GSVIVT00024186001; LOC_Os03g01530; LOC_Os0

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G23860.1	TUB8 tubulin beta 8 chr5:8042962-8044528 FORWARD LENGTH=449	9.0e-18	79%
RefSeq	Arabidopsis thaliana	NP_001190373.1	tubulin beta-8 chain [Arabidopsis thaliana]	1.0e-17	79%
RefSeq	Populus trichocarpa	XP_002309109.1	tubulin, beta chain [Populus trichocarpa]	1.0e-17	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9V7

Fln msg: Distance to subject end: 56 aas, your sequence is shorter than subject: 62 - 151

Fln protein: EPYNATLSVHQLVENAG*VVLGSRQLEALYDICFRTLKLTTPSFGDLNHFNLCDYEWSDSAA

Protein Length: 63

Fln nts: GGAACCCTACAACGCTACGCTCTCTGTTCATCAGCTGGTGGAAAATGCAGGATGAGTGGTATTGGGTTCTCGACAATTGGAGGCCCTGTACGACATTTGTTTCAGGACACTCAAGCTCACTACTCCTAGCTTCGGAGATTTGAACCATTTTAATCTCTGCGACTATGAGTGGAGTGACAGTGCTGCCTC

Fln Alignment:

F585NNT02G1BJN___EPYNATLSVHQLVENAG*VVLGSRQLEALYDICFRTLKLTTPSFGDLNH
D5A9V7_______________EPYNATLSVHQLVENADECMVLDN--EALYDICFRTLKLTTPSFGDLNH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain