SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55528

Length: 445 nt

UniGene Fasta

>sp_v3.0_unigene55528
GCCAAAGGGTTTTCTCAAGTGGAGGGCATTGTCTATGATGAGACTTTTGTACCTGTGGCCCATTATTCATCCATCAAGACCATTATAGCACTTGCAGCGCAAATAGGGTGAAAGACCCACCAGATGGATGTGAAGACTGCCTTCCTCATTAGTGTTGTTGAGGAAGAGATTTACATAGAGCAGCCAGATGGGTCTGAGGTACATAGCAAGGAGACACATGCTTGTAGGTTCAAAAGAGCTCTTTATGGGCTCCAGCAAGCCCCACGAGCATGGTATTTGCGAATTGACAGTTATCTTCTAAGACTGGGCTTCACCAAGGGTGAAGTTGACCCTAACTGTACTACATTATGGTCGGATGAGCAGCCTCTCATTCTTGTGTTGTATGTAGACGACATCATATTTACAGGGATGAGAAGCTCATCAGTGACTGCAAGAAGAATATCAC

Ace file of the UniGene sp_v3.0_unigene55528

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY10_PICAB	-	-	1.0e-34	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	Retrotransposon protein, putative, Ty1-copia subclass	-	-	1.469e-20	-

Source	Gene names
Sma3	At2g15650; At2g17490; F11I4_21; LOC_Os03g01684; LOC_Os03g13260; LOC_Os03g13700; LOC_Os03g22100; LOC_Os03g24260; LOC_Os03g25890; LOC_Os03g37890; LOC_Os03g38850; LOC_Os03g61660; LOC_Os03g63124; LOC_Os10g01750; LOC_Os10g02120; LOC_Os10g03000; LOC_Os10g04040;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	transposition	GO:0032196	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	4Fe-4S binding domain	IPR001450	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	RNase L inhibitor RLI, possible metal-binding domain	IPR007209	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR010256	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	ABC transporter, ABCE	IPR013283	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	4Fe-4S ferredoxin-type, iron-sulpur binding domain	IPR017896	-	-
Sma3	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	IPR017900	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Lysosome-associated membrane glycoprotein, conserved site	IPR018134	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Distance to subject end: 164 aas, your sequence is shorter than subject: 148 - 363

Fln protein: AKGFSQVEGIVYDETFVPVAHYSSIKTIIALAAQIG*KTHQMDVKTAFLISVVEEEIYIEQPDGSEVHSKETHACRFKRALYGLQQAPRAWYLRIDSYLLRLGFTKGEVDPNCTTLWSDEQPLILVLYVDDIIFTGMRSSSVTARRIS

Protein Length: 149

Fln nts: GCCAAAGGGTTTTCTCAAGTGGAGGGCATTGTCTATGATGAGACTTTTGTACCTGTGGCCCATTATTCATCCATCAAGACCATTATAGCACTTGCAGCGCAAATAGGGTGAAAGACCCACCAGATGGATGTGAAGACTGCCTTCCTCATTAGTGTTGTTGAGGAAGAGATTTACATAGAGCAGCCAGATGGGTCTGAGGTACATAGCAAGGAGACACATGCTTGTAGGTTCAAAAGAGCTCTTTATGGGCTCCAGCAAGCCCCACGAGCATGGTATTTGCGAATTGACAGTTATCTTCTAAGACTGGGCTTCACCAAGGGTGAAGTTGACCCTAACTGTACTACATTATGGTCGGATGAGCAGCCTCTCATTCTTGTGTTGTATGTAGACGACATCATATTTACAGGGATGAGAAGCTCATCAGTGACTGCAAGAAGAATATCAC

Fln Alignment:

F585NNT02F8SW4___AKGFSQVEGIVYDETFVPVAHYSSIKTIIALAAQIG*KTHQMDVKTAFLISVVEEEIYIEQPDGSEVHSKETHACRFKRALYGLQQAPRAWYLRIDSYLLRLGFTKGEVDPNCTTLWSDE-QPLILVLYVDDIIFTG
B8LKV8_______________AKGFAQEYGVDYNETFAPVARLDTIRMVLAIAAQHNWKVYQMDVKSAFLNGYLEEEVYVQQPPRYEVRGQEDKVYRLKKALNGLKQAPRAWYSKIDSYMIKNEFIRSTSEPTLYTKVNEQGQILIVCLYVDDLIYTG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain