SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55338

Length: 212 nt

UniGene Fasta

>sp_v3.0_unigene55338
TGCCTGTTGAAGCTGATGCTATGATTTGGCGGACCTTACTTGGTGCCTGCAGGGTACGTGGTAATTTGGAACTAGGAAAATATGCAGCACAGCGTATTCTTGAGCTAGAGCCTGAAGACTCTGCAGCATATGTGCTTCTGTCAAACATCTATAGTGCAGCTGGAAAATGGGTGGATAGAGATGGCGTGAGAAAATTGATGGATGGCAGCAAT

Ace file of the UniGene sp_v3.0_unigene55338

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%

Source	Gene names
Sma3	At2g27610; At3g49170; At4g13650; At4g33170; EMB2261; F10A12.28; F15K20.29; F18A5.40; F2K15.30; F4I10.100; GSVIVT00005238001; GSVIVT00006516001; GSVIVT00007922001; GSVIVT00011403001; GSVIVT00011842001; GSVIVT00013064001; GSVIVT00013634001; GSVIVT0001552700

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G49170.1	EMB2261 Tetratricopeptide repeat (TPR)-like superfamily protein chr3:18226954-18229600 REVERSE LENGTH=850	3.0e-21	55%
RefSeq	Arabidopsis thaliana	NP_190486.2	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	4.0e-21	55%
RefSeq	Populus trichocarpa	XP_002319164.1	predicted protein [Populus trichocarpa]	6.0e-23	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 139 aas, your sequence is shorter than subject: 70 - 370

Fln protein: PVEADAMIWRTLLGACRVRGNLELGKYAAQRILELEPEDSAAYVLLSNIYSAAGKWVDRDGVRKLMDGSN

Protein Length: 71

Fln nts: TGCCTGTTGAAGCTGATGCTATGATTTGGCGGACCTTACTTGGTGCCTGCAGGGTACGTGGTAATTTGGAACTAGGAAAATATGCAGCACAGCGTATTCTTGAGCTAGAGCCTGAAGACTCTGCAGCATATGTGCTTCTGTCAAACATCTATAGTGCAGCTGGAAAATGGGTGGATAGAGATGGCGTGAGAAAATTGATGGATGGCAGCAAT

Fln Alignment:

F51TW9002GZMI5___PVEADAMIWRTLLGACRVRGNLELGKYAAQRILELEPEDSAAYVLLSNIYSAAGKWVDRDGVRKLM
A9P0W0_______________PVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain