SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55337

Length: 379 nt

UniGene Fasta

>sp_v3.0_unigene55337
GAGTTGGATGTTCTAGATTTCTGTTCTGATGAGCTACGTGAGAAGTTGAAGGAACCACGACAGATTCTTAGAGATCAAGAAAATACAAAATTTGGATTGAAGTCAAAGGGAAAGGAGAGTGATAACAAGGATAAATACGTGGAAATGTCAAATACAGAGGTATCCTTGAGTAATAGCTGTGAATCATCGAATAGCAATGCTTCTGGAGCTATGGACTTACAGAATCAAACAAGAGAATGGAAAGTGGATTGAGTTTGATGATGAAAATCCTATTCCGCAGAGAGAGGAAGATATAACAAAGCTTTCTGGCGGAGGGGATTGGCACATGGCATATATATGTATGTACAAAGCCCGCACTATAGTCACTCCTTGAGTAAAG

Ace file of the UniGene sp_v3.0_unigene55337

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Picea sitchensis RepID=A9NUT3_PICSI	-	-	0.0	97%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Ubiquitin carboxyl-terminal hydrolase	-	-	6.899e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ubiquitin thiolesterase.	EC:3.1.2.15	-	1.553e-23	-

Source	Gene names
Sma3	At1g51710; At3g21280; B1156H12.24; F19C24.8; GSVIVT00034204001; MXL8.15; OSJNBa0024F24.9; Os01g0550100; OsI_02374; OsJ_02180; PHYPADRAFT_207886; POPTRDRAFT_592725; POPTRDRAFT_597670; RCOM_0004440; UBP6; UBP7;

Source	GOs	Term	Type	Identity
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	ubiquitin-specific protease activity	GO:0004843	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	protein deubiquitination	GO:0016579	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G51710.1	UBP6, ATUBP6 ubiquitin-specific protease 6 chr1:19175805-19179894 REVERSE LENGTH=482	5.0e-20	78%
RefSeq	Arabidopsis thaliana	NP_001077698.1	ubiquitin carboxyl-terminal hydrolase 6 [Arabidopsis thaliana]	5.0e-20	78%
RefSeq	Populus trichocarpa	XP_002329033.1	predicted protein [Populus trichocarpa]	4.0e-25	89%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUT3

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 125 - 480

Fln protein: ELDVLDFCSDELREKLKEPRQILRDQENTKFGLKSKGKESDNKDKYVEMSNTEVSLSNSCESSNSNASGAMDLQxxxxxNGKWIEFDDENPIPQREEDITKLSGGGDWHMAYICMYKARTIVTP*

Protein Length: 126

Fln nts: GAGTTGGATGTTCTAGATTTCTGTTCTGATGAGCTACGTGAGAAGTTGAAGGAACCACGACAGATTCTTAGAGATCAAGAAAATACAAAATTTGGATTGAAGTCAAAGGGAAAGGAGAGTGATAACAAGGATAAATACGTGGAAATGTCAAATACAGAGGTATCCTTGAGTAATAGCTGTGAATCATCGAATAGCAATGCTTCTGGAGCTATGGACTTACAGxxxxxxxxxxxxxxxAATGGAAAGTGGATTGAGTTTGATGATGAAAATCCTATTCCGCAGAGAGAGGAAGATATAACAAAGCTTTCTGGCGGAGGGGATTGGCACATGGCATATATATGTATGTACAAAGCCCGCACTATAGTCACTCCTTGAGTAAAG

Fln Alignment:

F51TW9002GYNHT___ELDVLDFCSDELREKLKEPRQILRDQENTKFGLKSKGKESDNKDKYVEMSNTEVXXXXXXXXXXXXXXGAMDLQNQTRxxxxxxxxxxxxxxxxxxxxxxxxxxIKQENGKWIEFDDENPIPQREEDITKLSGGGDWHMAYICMYKARTIVTP
A9NUT3_______________ELDVLDFCSDELREKLKEPRQILRDQENTKFGLK-KGNQSDSKDKDVEMSNAEVSLSTSCESSNSNAAGAMDIQKQAQxxxxxxxxxxxxxxxxxxxxxxxxxxVKQENGKWIEFDDENPIPQREEDITKLSGGGDWHMAYICMYKARTIVTP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain