SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55331

Length: 211 nt

UniGene Fasta

>sp_v3.0_unigene55331
ATGGGAAATAAATGTTGTTTGAACCAAATGCTTTGGTATGGCGGACCTTGCTGTCTGCCTGTAAATCCATGGCAATGTGGATTTAGGCAAACGGGCAGCAAAACATATCCTCGAGTTGGAACCACAAGATTCTTCAGCATATGTGCTTTTGTCAAATATATATGCTGCAGCTGGCAGGTGGGATTGTCTTGCAAATGCGAGGAAAAGGATG

Ace file of the UniGene sp_v3.0_unigene55331

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SVP7.2\|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650 gb\|AEE83309.1\| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	-	-	6.0e-12	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%

Source	Gene names
Sma3	GSVIVT00005238001; GSVIVT00013064001; GSVIVT00030057001; GSVIVT00032298001; GSVIVT00032300001; POPTRDRAFT_581687; VITISV_010023; VITISV_016538; VITISV_032085;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G13650.1	Pentatricopeptide repeat (PPR) superfamily protein chr4:7939611-7942898 REVERSE LENGTH=1064	4.0e-14	49%
RefSeq	Arabidopsis thaliana	NP_193101.2	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	5.0e-14	49%
RefSeq	Populus trichocarpa	XP_002319164.1	predicted protein [Populus trichocarpa]	8.0e-16	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 143 aas, your sequence is shorter than subject: 70 - 246

Fln protein: WEINVV*TKCFGMADLAVCL*IHGNVDLGKRAAKHILELEPQDSSAYVLLSNIYAAAGRWDCLANARKRM

Protein Length: 71

Fln nts: ATGGGAAATAAATGTTGTTTGAACCAAATGCTTTGGTATGGCGGACCTTGCTGTCTGCCTGTAAATCCATGGCAATGTGGATTTAGGCAAACGGGCAGCAAAACATATCCTCGAGTTGGAACCACAAGATTCTTCAGCATATGTGCTTTTGTCAAATATATATGCTGCAGCTGGCAGGTGGGATTGTCTTGCAAATGCGAGGAAAAGGATG

Fln Alignment:

F585NNT02IJZEL___IHGNVDLGKRAAKHILELEPQDSSAYVLLSNIYAAAGRWDCLANARKRM
D5AAE0_______________MYGNIDLGKHAAECLFQLEPHNAAKYVLLSNIYAAAGRWDDVAKVRKIM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain