SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55275

Length: 436 nt

UniGene Fasta

>sp_v3.0_unigene55275
ATGGGGATCCACTGCATTGCATTCCTTTTGATATCTCTGCCGATTATCGTTTCATATAATCTGGATCTACTTTGCTGAATTTAATATCTTTAGCATTTTCAAGTTCGAATCAGTATGGCCGAGCAAGCGCCGGAGCACCAGGATCGCGGCCTGTTCGGGTTTTTTGGCAAGAAGGAAGCTGAGCAACAAAAACACACGGGTTTGTTCGGCAAGGACGAGGAGGAAAAGCATGTAGAGAAAACCCACACCCACAGTGAGGCTCAGAATGAGGCTGCTTCTTATTATCCAGCTGCTCCTCCGCATGGAGCCGAACACGGCCATGGTCACGAGGGGCAACTTACCCCTGAGGAAGCTGAGCAACAGAAACACACGGGTTTGATGGGAAAGCTTCATCGCACCCACAGTTCCAGCTCCATCTCTTCTAGTGATGAAGAGG

Ace file of the UniGene sp_v3.0_unigene55275

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dehydrin 4 n=2 Tax=Picea abies RepID=A9XKN0_PICAB	-	-	8.0e-16	47%
FL-Next	tr=Dehydrin 4; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	70%
Sma3	Dehydrin-like protein	-	-	1.658e-21	-

Source	Gene names
Sma3	Dhn; Dhn1; Dhn3; Dhn4; Dhn5; dhn-1; dhn-2; dhn1; dhn2; dhn9;

Source	GOs	Term	Type	e value	Identity
Sma3	response to stress	GO:0006950	Biological Process	0.0	-
Sma3	response to water	GO:0009415	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Dehydrin	IPR000167	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9XKM9

Fln msg: Distance to subject end: 70 aas, your sequence is shorter than subject: 107 - 169

Fln protein: MAEQAPEHQDRGLFGFFGKKEAEQQKHTGLFGKDEEEKHVEKTHTHSEAQNEAASYYPAAPPHGAEHGHGHEGQLTPEEAEQQKHTGLMGKLHRTHSSSSISSSDEE

Protein Length: 108

Fln nts: ATGGGGATCCACTGCATTGCATTCCTTTTGATATCTCTGCCGATTATCGTTTCATATAATCTGGATCTACTTTGCTGAATTTAATATCTTTAGCATTTTCAAGTTCGAATCAGT_-_ATGGCCGAGCAAGCGCCGGAGCACCAGGATCGCGGCCTGTTCGGGTTTTTTGGCAAGAAGGAAGCTGAGCAACAAAAACACACGGGTTTGTTCGGCAAGGACGAGGAGGAAAAGCATGTAGAGAAAACCCACACCCACAGTGAGGCTCAGAATGAGGCTGCTTCTTATTATCCAGCTGCTCCTCCGCATGGAGCCGAACACGGCCATGGTCACGAGGGGCAACTTACCCCTGAGGAAGCTGAGCAACAGAAACACACGGGTTTGATGGGAAAGCTTCATCGCACCCACAGTTCCAGCTCCATCTCTTCTAGTGATGAAGAGG

Fln Alignment:

F51TW9002G2DFX___MAEQAPEHQDRGLFGFFGKKEAEQQKHTGLFGXXXXXXXXXXXXXXXXAQNEAASYYXXXXXXXXXXXXXXXXQLTPEEAEQQKHTGLMGKLHRTHXXXXXXXXDEE
A9XKM9_______________MAEQAPEHQDRGLFGLFGKKKEE--------GKHDDDQILHPPDTHTHTQNEAASYYPTPPQHGVEHGHGHEGQLTPEEAEKQKHTGLLGKLHRTHSSSSSSSSDEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain