SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55240

Length: 274 nt

UniGene Fasta

>sp_v3.0_unigene55240
TTCGATCAAAGAGGAAGTCTAAGTGGAACAACCCGAGGGGTTTGAGGTTCATGACCAGGAATCTCATGTATGCAGGTTGAAGAAAGCTCTCTATAGATTGAAGCAAGTACCACAGGCTTGGTATGAGAGGATCAATAGCTATCTGATGAAGCTGGGATTCACTAGAAGTGAAGTTGATCCGAACCTTTACTTTAAGGTTGAAAATGATAAACCTCTCATTCTGCTACTTTATGTGGACGACCTCTTTCTGACATGTGCAGACCCTCTCATTCAC

Ace file of the UniGene sp_v3.0_unigene55240

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Pinus coulteri RepID=Q06298_PINCU	-	-	9.0e-23	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Reverse transcriptase	-	-	3.131e-19	-

Source	Gene names
Sma3	At2g15650; LOC_Os03g61660; LOC_Os12g44200; OSJNBa0053E05.7; OSJNBa0078D06.27; RT; VITISV_002093; VITISV_010671; VITISV_011061; VITISV_013624; VITISV_014188; VITISV_020406; VITISV_020777; VITISV_024577; VITISV_026972; VITISV_032906; VITISV_033739; VITISV_0

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR010256	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Distance to subject end: 171 aas, your sequence is shorter than subject: 91 - 363

Fln protein: SIKEEV*VEQPEGFEVHDQESHVCRLKKALYRLKQVPQAWYERINSYLMKLGFTRSEVDPNLYFKVENDKPLILLLYVDDLFLTCADPLIH

Protein Length: 92

Fln nts: TTCGATCAAAGAGGAAGTCTAAGTGGAACAACCCGAGGGGTTTGAGGTTCATGACCAGGAATCTCATGTATGCAGGTTGAAGAAAGCTCTCTATAGATTGAAGCAAGTACCACAGGCTTGGTATGAGAGGATCAATAGCTATCTGATGAAGCTGGGATTCACTAGAAGTGAAGTTGATCCGAACCTTTACTTTAAGGTTGAAAATGATAAACCTCTCATTCTGCTACTTTATGTGGACGACCTCTTTCTGACATGTGCAGACCCTCTCATTCAC

Fln Alignment:

F51TW9002JZJSK___IKEEV*VEQPEGFEVHDQESHVCRLKKALYRLKQVPQAWYERINSYLMKLGFTRSEVDPNLYFKV
B8LKV8_______________LEEEVYVQQPPRYEVRGQEDKVYRLKKALNGLKQAPRAWYSKIDSYMIKNEFIRSTSEPTLYTKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain