SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55170

Length: 442 nt

UniGene Fasta

>sp_v3.0_unigene55170
CATCTGAAAATGACTGTGATGAAGATAGAAGCTCATCATCCTAATGTGCTGCTGGTTGAGAAAACCGTGTCCCGTTATGCACAAGAGTATTTGCTCGCAAAAGAGATATCTTTGGTACTGAATGTCAAAAGACCTCTTTTGGAGCGTATAGCCCGTTGCACAGGGGCACAGATTGTACCTTCAGTTGATAATCTGACTGCACCAAAACTGGGACATTGTGAGTTCTTTCGTGTGGAAAAGTTCATTGAGGAGCATGGCAGTGCTGGTCAGGCAGGGAAAAAATTACTGAAAACCTTGATGTTCTTTGATGGTTGCCCAAAGCCTTTGGGTTGCACGGTATTGCTCAAGGGTGCAAATGGTGATGAATTAAAGAAAGTCAAACGCGTTGTTCAGTATGCTATCTTTGCAGCTTATCATTTAGCTCTTGAAACATCTTTCCTTG

Ace file of the UniGene sp_v3.0_unigene55170

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	1-phosphatidylinositol-3-phosphate 5-kinase-like [Oryza sativa Japonica Group]	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	26%
Sma3	Fyve finger-containing phosphoinositide kinase, fyv1, putative	-	-	6.055e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.7.1.15-	-	2.422e-11	-

Source	Gene names
Sma3	AT4g33240; At1g34260; At1g71010; At3g14270; At4g33240; F15H11.20; F23M19.8; F4I10.170; GSVIVT00001768001; GSVIVT00016365001; GSVIVT00030472001; GSVIVT00034003001; LOC_Os03g28140; LOC_Os12g13440; MICPUCDRAFT_18243; MtrDRAFT_AC183502g30v2; OJ1005_H01.27; OJ

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	phosphatidylinositol phosphate kinase activity	GO:0016307	Molecular Function	-
Sma3	cellular protein metabolic process	GO:0044267	Biological Process	-
Sma3	phosphatidylinositol metabolic process	GO:0046488	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	Phosphatidylinositol-4-phosphate 5-kinase, core	IPR002498	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G33240.1	" FAB1A 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases chr4:16029504-16037278 REVERSE LENGTH=1757"	75%
RefSeq	Arabidopsis thaliana	NP_001190899.1	1-phosphatidylinositol-3-phosphate 5-kinase [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002303329.1	predicted protein, partial [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A831

Fln msg: Distance to subject end: 148 aas, your sequence is shorter than subject: 147 - 556

Fln protein: HLKMTVMKIEAHHPNVLLVEKTVSRYAQEYLLAKEISLVLNVKRPLLERIARCTGAQIVPSVDNLTAPKLGHCEFFRVEKFIEEHGSAGQAGKKLLKTLMFFDGCPKPLGCTVLLKGANGDELKKVKRVVQYAIFAAYHLALETSFL

Protein Length: 148

Fln nts: CATCTGAAAATGACTGTGATGAAGATAGAAGCTCATCATCCTAATGTGCTGCTGGTTGAGAAAACCGTGTCCCGTTATGCACAAGAGTATTTGCTCGCAAAAGAGATATCTTTGGTACTGAATGTCAAAAGACCTCTTTTGGAGCGTATAGCCCGTTGCACAGGGGCACAGATTGTACCTTCAGTTGATAATCTGACTGCACCAAAACTGGGACATTGTGAGTTCTTTCGTGTGGAAAAGTTCATTGAGGAGCATGGCAGTGCTGGTCAGGCAGGGAAAAAATTACTGAAAACCTTGATGTTCTTTGATGGTTGCCCAAAGCCTTTGGGTTGCACGGTATTGCTCAAGGGTGCAAATGGTGATGAATTAAAGAAAGTCAAACGCGTTGTTCAGTATGCTATCTTTGCAGCTTATCATTTAGCTCTTGAAACATCTTTCCTTG

Fln Alignment:

F51TW9002FT2TR___HLKMTVMKIEAHHPNVLLVEKTVSRYAQEYLLAKEISLVLNVKRPLLERIARCTGAQIVPSVDNLTAPKLGH-CEFFRVEKFIEEHGSAGQAGKKLLKTLMFFDGCPKPLGCTVLLKGANGDELKKVKRVVQYAIFAAYHL
D5A831_______________YIEKICMQILCFKPDLVITEKGLSDLAAHYLSKAGVSAIRRLRKTDNNRIAKACGATVVNRPEELQESDVGTGAGLFEVQKIGDEY-------------FTYIVECKDPKACTVLLRGASKDLLNEVGRNLQDAMSVARNM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain