SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55128

Length: 411 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene55128
CCGGAAGTTGCGTTTCCCTTACTGGCCAATTGCGCCAGAGTCCAGGCTCTGGGCAAGCTGTAGAGCTCCAAGTCTCGAATGTTGATGTCTTGGGCGAATGCGACGAGACCTACCCTATGCAGAAGAAGGCGCATGGCGCAGCCTTCCTTCGCAAGCACCCTCATCTTCGTATGCGAACAGATAGCATAGCTGCTATGCTGCGAACTCGTGATGCCTGCTCTCGTGGCGTCTCTGATTGCCTTAGGGATTTGGGCTTTCAGCAGACCGAAGCACCCATCCTAACAGCTTCGGATTGTGAAGGCGGGTCAGCCGTCTTCCAGGTCCATGCCTCAACTTCCTCCAAACCCTTTTTCGACCGACCCACCTTTCTGTCTGTTTCCACCCAACTCTACTTAGAAGCCCTCTCAGCTT

Ace file of the UniGene sp_v3.0_unigene55128 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: asparaginyl-tRNA synthetase 2, mitochondrial n=1 Tax=Oryctolagus cuniculus RepID=UPI0001C6375E	-	-	8.0e-25	42%
FL-Next	sp=Asparagine--tRNA ligase, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	37%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O48593

Fln msg: Distance to subject end: 242 aas, your sequence is shorter than subject: 136 - 567

Fln protein: GSCVSLTGQLRQSPGSGQAVELQVSNVDVLGECDETYPMQKKAHGAAFLRKHPHLRMRTDSIAAMLRTRDACSRGVSDCLRDLGFQQTEAPILTASDCEGGSAVFQVHASTSSKPFFDRPTFLSVSTQLYLEALSA

Protein Length: 137

Fln nts: CCGGAAGTTGCGTTTCCCTTACTGGCCAATTGCGCCAGAGTCCAGGCTCTGGGCAAGCTGTAGAGCTCCAAGTCTCGAATGTTGATGTCTTGGGCGAATGCGACGAGACCTACCCTATGCAGAAGAAGGCGCATGGCGCAGCCTTCCTTCGCAAGCACCCTCATCTTCGTATGCGAACAGATAGCATAGCTGCTATGCTGCGAACTCGTGATGCCTGCTCTCGTGGCGTCTCTGATTGCCTTAGGGATTTGGGCTTTCAGCAGACCGAAGCACCCATCCTAACAGCTTCGGATTGTGAAGGCGGGTCAGCCGTCTTCCAGGTCCATGCCTCAACTTCCTCCAAACCCTTTTTCGACCGACCCACCTTTCTGTCTGTTTCCACCCAACTCTACTTAGAAGCCCTCTCAGCTT

Fln Alignment:

F51TW9001ARSM4___GSCVSLTGQLRQSPGSGQAVELQVSNVDVLGECDETYPMQKKAHGAAFLRKHPHLRMRTDSIAAMLRTRDACSRGVSDCLRDLGFQQTEAPILTASDCEGGSAVFQV-------HASTS----------------SKPFFDRPTFLSVSTQL----YLEALS
O48593_______________GASVSVQGTIVASQGTKQKVELKVEKIIVVGECDSSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDCEGAGEQFCVTTLIPSSHENTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYATALS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain