SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55114

Length: 309 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene55114
GTGTGGAATCATTACAAAAAGTAGAAGCCCATACATTGCTCCAGTGGAATCGAGCACTGAATAAGGTAACGATTAAGAATACGTTTTCGATCCCCTTTATAGATGAAATGCTAGATGAACTTCTTGAAGCCCAATATTTTCAAAATTGGACTTGAAATCGAGATACTACTAGATCAAAATAATACTAGAGGACATAGCGAAGATTGTTTTTCGAACACATGAAGGTCATTATGAATTTAAGGTAATGCAATTCGAATGAACTAATGCTCCAACAACCTTCCAAGCCACCATGAATGAGGTATTTCTCCT

Ace file of the UniGene sp_v3.0_unigene55114 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	polyprotein [Primula vulgaris]	-	-	6.0e-18	59%
FL-Next	sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion.	-	-	0.0	53%

Source	Gene names
Sma3	F23H6.1; LOC_Os03g05350; LOC_Os10g28310; LOC_Os11g45000; OSJNBa0004L19.22; OSJNBa0045O17.10; OSJNBa0067N01.10; Os04g0316700; Os08g0164800; Os08g0344700; Os10g0419000; RT; VITISV_012977; VITISV_020159; VITISV_026680; VITISV_037062; VITISV_039388; VITISV_04

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: P31843

Fln msg: Overlapping hits, possible frame ERROR between 140 and 137, Unexpected STOP codon at 3' end. Distance to subject end: 43 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 86 - 142

Fln protein: VESLQKVEAHTLLQWNRALNKVTIKNTFSIPFIDEMLDELLEAQxxxKLDLKSRYY*IKIILEDIAKIVFRTHEGHYEFKVMQFE*

Protein Length: 87

Fln nts: GTGTGGAATCATTACAAAAAGTAGAAGCCCATACATTGCTCCAGTGGAATCGAGCACTGAATAAGGTAACGATTAAGAATACGTTTTCGATCCCCTTTATAGATGAAATGCTAGATGAACTTCTTGAAGCCCAAxxxxxxxxxAAATTGGACTTGAAATCGAGATACTACTAGATCAAAATAATACTAGAGGACATAGCGAAGATTGTTTTTCGAACACATGAAGGTCATTATGAATTTAAGGTAATGCAATTCGAATGAACTAATGCTCCAACAACCTTCCAAGCCACCATGAATGAGGTATTTCTCCT

Fln Alignment:

F51TW9001BPW8F___RALNKVTIKNTFSIPFIDEMLDELLEAQYxSKLDLKSRYY*IKIILEDIAKIVFRTHEGHYEFKVMQFE*TNAPTTFQATMNEV
P31843_______________RALTKVTIKNKYPIPRVDDLFDRLAQATWxTKLDLRSGYWQVRIAKGDEPKTTCVTRYGSFEFRVMPFGLTNALATFCNLMNNV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain