UniGene Name: sp_v3.0_unigene55065
Length: 207 nt
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>sp_v3.0_unigene55065
G |
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Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | Iron-sulfur subunit of mitochondrial succinate dehydrogenase n=1 Tax=Volvox carteri f. nagariensis RepID=D8THU1_VOLCA | - | - | 2.0e-33 | 88% |
FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 76% |
Sma3 | Iron-sulfur subunit of complex II | - | - | 1.027e-17 | - |
Source | ECs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Succinate dehydrogenase (ubiquinone). | EC:1.3.5.1 | - | 3.203e-30 | - |
Source | KEGGs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Citrate cycle (TCA cycle) | 00020 | 3.203e-30 | % | |
Sma3 | Oxidative phosphorylation | 00190 | 3.203e-30 | % | |
Sma3 | Biosynthesis of phenylpropanoids | 01061 | 3.203e-30 | % | |
Sma3 | Biosynthesis of terpenoids and steroids | 01062 | 3.203e-30 | % | |
Sma3 | Biosynthesis of alkaloids derived from shikimate pathway | 01063 | 3.203e-30 | % | |
Sma3 | Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid | 01064 | 3.203e-30 | % | |
Sma3 | Biosynthesis of alkaloids derived from histidine and purine | 01065 | 3.203e-30 | % | |
Sma3 | Biosynthesis of alkaloids derived from terpenoid and polyketide | 01066 | 3.203e-30 | % | |
Sma3 | Biosynthesis of plant hormones | 01070 | 3.203e-30 | % | |
Sma3 | Metabolic pathways | 01100 | 3.203e-30 | % | |
Sma3 | Biosynthesis of secondary metabolites | 01110 | 3.203e-30 | % |
Source | Gene names |
---|---|
Sma3 | AT3G27380; At3g27380; At5g40650; At5g65165; B1168F12.7; CHLREDRAFT_142231; GSVIVT00004046001; GSVIVT00020593001; K1G2.9; MICPUCDRAFT_48178; MICPUN_105014; MNF13.170; MNF13.21; MQN23.10; OJ1005_B05.29-1; OJ1005_B05.29-2; OSTLU_43363; Os08g0120000; Os09g037 |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | mitochondrion | GO:0005739 | Cellular Component | 0.0 | - |
Sma3 | mitochondrial inner membrane | GO:0005743 | Cellular Component | 0.0 | - |
Sma3 | ribosome | GO:0005840 | Cellular Component | 0.0 | - |
Sma3 | structural constituent of ribosome | GO:0003735 | Molecular Function | 0.0 | - |
Sma3 | iron ion binding | GO:0005506 | Molecular Function | 0.0 | - |
Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
Sma3 | succinate dehydrogenase (ubiquinone) activity | GO:0008177 | Molecular Function | 0.0 | - |
Sma3 | electron carrier activity | GO:0009055 | Molecular Function | 0.0 | - |
Sma3 | oxidoreductase activity | GO:0016491 | Molecular Function | 0.0 | - |
Sma3 | iron-sulfur cluster binding | GO:0051536 | Molecular Function | 0.0 | - |
Sma3 | 2 iron, 2 sulfur cluster binding | GO:0051537 | Molecular Function | 0.0 | - |
Sma3 | 3 iron, 4 sulfur cluster binding | GO:0051538 | Molecular Function | 0.0 | - |
Sma3 | 4 iron, 4 sulfur cluster binding | GO:0051539 | Molecular Function | 0.0 | - |
Sma3 | tricarboxylic acid cycle | GO:0006099 | Biological Process | 0.0 | - |
Sma3 | translation | GO:0006412 | Biological Process | 0.0 | - |
Sma3 | transport | GO:0006810 | Biological Process | 0.0 | - |
Sma3 | electron transport chain | GO:0022900 | Biological Process | 0.0 | - |
Sma3 | oxidation-reduction process | GO:0055114 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | 2Fe-2S ferredoxin-type domain | IPR001041 | - | 0.0 | - |
Sma3 | Ribosomal protein S14 | IPR001209 | - | 0.0 | - |
Sma3 | ATPase-like, ATP-binding domain | IPR003594 | - | 0.0 | - |
Sma3 | Succinate dehydrogenase/fumarate reductase iron-sulphur protein | IPR004489 | - | 0.0 | - |
Sma3 | 2Fe-2S ferredoxin, iron-sulphur binding site | IPR006058 | - | 0.0 | - |
Sma3 | Fumarate reductase, C-terminal | IPR012285 | - | 0.0 | - |
Sma3 | Beta-grasp domain | IPR012675 | - | 0.0 | - |
Sma3 | 4Fe-4S ferredoxin-type, iron-sulpur binding domain | IPR017896 | - | 0.0 | - |
Sma3 | 4Fe-4S ferredoxin, iron-sulphur binding, conserved site | IPR017900 | - | 0.0 | - |
Sma3 | Ribosomal protein S14, conserved site | IPR018271 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
---|---|---|---|---|---|
ATG | Arabidoptis thaliana | AT3G27380.1 | SDH2-1 succinate dehydrogenase 2-1 chr3:10131209-10132673 REVERSE LENGTH=279 | 5.0e-38 | 76% |
RefSeq | Arabidopsis thaliana | NP_001118718.1 | succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1 [Arabidopsis thaliana] | 6.0e-38 | 76% |
RefSeq | Populus trichocarpa | XP_002298583.1 | predicted protein [Populus trichocarpa] | 3.0e-37 | 75% |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: B8LP54
Fln msg: Distance to subject end: 25 aas, your sequence is shorter than subject: 69 - 275
Fln protein:
G
Protein Length:
70
Fln nts:
G
Fln Alignment:
F51TW9001EOLFE___GLYECILCACCSTSCPSYWWNEDKYLGPAVLLQAYRWIVDSRDDFTKERLAQLDDAYKLYRCHTIMNC
B8LP54_______________GMYECILCACCSTSCPSYWWNPEKYLGPAALLHANRWISDSRDEYTEERLDAVTDEFKLYRCHTIMNC
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain